Bneb019439.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachynemurus nebulosus
Gene Symbol
PRDM15
Assembly
GCA_035578155.1
Location
JAPWDM010000005.1:54213842-54219432[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.0047 0.26 13.2 0.4 3 23 196 215 195 215 0.98
2 22 0.00015 0.008 17.9 4.0 1 23 221 243 221 243 0.99
3 22 3.1e-05 0.0017 20.1 2.1 1 23 249 272 249 272 0.97
4 22 1.6e-06 8.9e-05 24.1 1.5 1 23 285 307 285 307 0.98
5 22 0.0016 0.088 14.7 1.3 1 23 312 334 312 334 0.97
6 22 0.074 4 9.5 1.0 1 23 340 362 340 362 0.97
7 22 3.8e-06 0.00021 23.0 1.8 1 23 367 389 367 389 0.96
8 22 0.0013 0.07 15.0 2.5 1 23 395 417 395 417 0.98
9 22 0.0011 0.06 15.2 4.8 1 23 423 445 423 445 0.99
10 22 9.6e-06 0.00052 21.7 0.1 1 23 451 473 451 473 0.98
11 22 0.097 5.3 9.1 1.7 1 15 479 493 479 493 0.94
12 22 0.0054 0.29 13.0 0.4 3 23 503 522 502 522 0.98
13 22 0.0011 0.062 15.2 5.2 1 23 528 550 528 550 0.98
14 22 4.5e-06 0.00024 22.7 2.3 1 23 556 579 556 579 0.97
15 22 1.6e-06 8.9e-05 24.1 1.5 1 23 592 614 592 614 0.98
16 22 0.0016 0.088 14.7 1.3 1 23 619 641 619 641 0.97
17 22 0.11 6.2 8.9 0.6 1 23 647 669 647 669 0.96
18 22 3.1e-06 0.00017 23.2 1.9 1 23 674 696 674 696 0.96
19 22 0.00048 0.026 16.3 2.6 1 23 702 724 702 724 0.99
20 22 0.0028 0.15 13.9 7.0 1 23 730 752 730 752 0.99
21 22 9.6e-06 0.00052 21.7 0.1 1 23 758 780 758 780 0.98
22 22 1.9e-05 0.001 20.7 3.8 1 23 786 808 786 809 0.96

Sequence Information

Coding Sequence
atggaTATAAAAGATTCAATAAGtattaattttgacaatatttgtcGCACGTGCTCTTTAGAGGGTGAAATGAAATCATTATTTGACACTGTAATTTTTACAGAACATTCTTTACACTCATTACGAATTGTGGACATGCTAATGGCAATCACTACTGTACAAgtatccGAAGAAGATAATTTACCAGTAAATATGTGTATGCCTtgtttaaataaacttttgaaagCGTATTTGTTTAAATTGCAATGTGAagatgttaatttaaaattagctgattttttttataattttaataaaaacgaaGATGTAGATGAATCTGAAAAAATCGAGAACTTACTTGAAGATAAAACTGATAATTTGTctacaatagaaaatattaaagtagaagaaaatgatattaaaaataaaccgcAAGTCAAAAAGAGTAGAAaaaaaagggtgaaaaatccaAATACTGTAACCCCAACGACAAAATATTGCAATTTATGTAATAAACAGATATCTGTGTACTTTTATGGTAAACATCTTAAATTGTGCCACAATAAAAATCTTATAGACCCAGCAAAACGGCCTAAAAAGAAACTATGCCAAATTTGCAACAGATCTTATGAGCCGTCATACTACCGTAAACATATCCGTATACATGAAGGTGATAAACGCTACAAATGTCCCCACTGCGGTAAATGTTTCGGTCACAAAAATGTGTTAGTCGGTCATATAAAAATTCATACTGGCGAAAAACCGTATGTGTGCGATATTTGTGGAAAAATGTTCCGCAAATTATGGAATCTACATGTACACAAGAAAAAACAACACTTTGGAGTGGATCCACTTAATCCGAAAACCGAAGTCCACCAGTGTTCAATATGTAACGCTGAATTTAGTCGTAAATCAGCCCTACGTCGCCATATGATCAGTCACGATAATGTCGTGTTCCCGTGTGATATATGTTCAAAAAAGTTCTTCACTTCCGAAAGATTAGAAATTCATCGCACGAAACATTTGACGGGGAAACCTTTCTATTGTCTGTTTTGTGACGAAACCTTTGAAACGctagaaatgaaaaaaaaccacGAAATAactcattcagataaaatttatcTATGCAATTACTGCGGCAAAAGTTTCGTCAGAAAATATTACTTCGATATTCACCTACGAACACATACCGGGGAAACCCCGTACAAATGTCGATTTTGTCGGAAGCCGTTTAAACGAACATCGACAATGAAAGCGCACGAGATGATTCATACCGGTGAGAAACCGTACACGTGTGAATATTGCCACAAGAAGTTTCGCTTGATCAACCAGTTGGATAATCATCGGCGCACGCATACTGGTAGTAAACCGTTCGTTTGTTCCGTTTGCGGCAAAGCGTTCGCTATGAAGGTCAATTTAACTGTGCATTTTCGTATACATTCGGGAGAAACGCCATTTGTTTGTTCGTACTGTGATAAAGGGTTTTACGATTCGAGCAACCCAGCAAAACGGCCAAAAAAGAAACTATGCCAAATCTGCAACAGATCTTATTATCCGTCATACTACCTTAAACATATCCGTATACATGAAGGTGATAAACGCTACAAATGTACTCACTGCGGTAAATGTTTCGGTCACAGAAATGTGTTAGTCGGTCATATAAAAATTCATACTGGCGAAAAACCATATGTGTGCgatatttgtggaaaaacgTTCCGTAAATCGTGGAATCTACatgtacatacaaaaaaacaacACTTTGGAGCGGATCCACTTAATCCGAAAACCGAAACCCACCAGTGTTCAATATGTAACGCTGAATTTAGTCGTAAATCAGCCCTACGTCGCCATATGATCAGTCACGATAATGTCGTGTTCCCGTGTGATATATGTTCGAAAAAGTTCTTCACTTCCGAAAGATTAGAAATTCATCGTACGAAACATTTGACGGGGAAACCTTTCGATTGTCTTTTTTGTGACGAAACATTTGAAACGctagaaatgaaaaaaaaccacGAAATAACTCATTCAGATAAGATTTATCTATGCAATTACTGCGGCAAGAGTTTCGTCAGAAAATTTTACCTCGATAGTCACCTACGAACACATACCGGGGAAACCCCGTACAAATGTCGATTTTGTCGGAAGCCGTTTAAGCAAACATCGTCAATGAAAGCGCACGAGAGGATTCATACCGGTGAGAAACCGTACACGTGTGAATATTGCCACAAGAAGTTTCGCTTGGTCAACCATTTGGATAATCATCGGCGCACGCATACTGGTAGTAAACCGTTCGTTTGTTCCGTTTGCGGCAAAGCGTTCGCTATGAAGGTCAATTTAACTGTGCATTTTCGTATACATTCGGGAGAAACGCCATTTGTTTGTTCGTACTGTGATAAAGGGTTTTACGATTCGAGCAGTATGAAAAAACATAAACGGATCCATCATAGTCCGAATGTTACTAATtgtgaaaaaatcgaaaaataa
Protein Sequence
MDIKDSISINFDNICRTCSLEGEMKSLFDTVIFTEHSLHSLRIVDMLMAITTVQVSEEDNLPVNMCMPCLNKLLKAYLFKLQCEDVNLKLADFFYNFNKNEDVDESEKIENLLEDKTDNLSTIENIKVEENDIKNKPQVKKSRKKRVKNPNTVTPTTKYCNLCNKQISVYFYGKHLKLCHNKNLIDPAKRPKKKLCQICNRSYEPSYYRKHIRIHEGDKRYKCPHCGKCFGHKNVLVGHIKIHTGEKPYVCDICGKMFRKLWNLHVHKKKQHFGVDPLNPKTEVHQCSICNAEFSRKSALRRHMISHDNVVFPCDICSKKFFTSERLEIHRTKHLTGKPFYCLFCDETFETLEMKKNHEITHSDKIYLCNYCGKSFVRKYYFDIHLRTHTGETPYKCRFCRKPFKRTSTMKAHEMIHTGEKPYTCEYCHKKFRLINQLDNHRRTHTGSKPFVCSVCGKAFAMKVNLTVHFRIHSGETPFVCSYCDKGFYDSSNPAKRPKKKLCQICNRSYYPSYYLKHIRIHEGDKRYKCTHCGKCFGHRNVLVGHIKIHTGEKPYVCDICGKTFRKSWNLHVHTKKQHFGADPLNPKTETHQCSICNAEFSRKSALRRHMISHDNVVFPCDICSKKFFTSERLEIHRTKHLTGKPFDCLFCDETFETLEMKKNHEITHSDKIYLCNYCGKSFVRKFYLDSHLRTHTGETPYKCRFCRKPFKQTSSMKAHERIHTGEKPYTCEYCHKKFRLVNHLDNHRRTHTGSKPFVCSVCGKAFAMKVNLTVHFRIHSGETPFVCSYCDKGFYDSSSMKKHKRIHHSPNVTNCEKIEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00240328;
90% Identity
iTF_00240328;
80% Identity
iTF_00240328;