Bneb018955.2
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000005.1:42060359-42061979[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 2.1 5.4e+03 -1.0 0.1 27 46 128 147 125 153 0.81 2 7 0.0069 18 7.0 0.1 20 48 149 177 132 181 0.80 3 7 0.0017 4.4 8.9 0.2 21 48 178 204 176 207 0.89 4 7 0.13 3.3e+02 2.9 0.0 21 43 303 325 296 331 0.80 5 7 0.12 3e+02 3.0 0.1 21 45 331 355 326 358 0.86 6 7 0.28 7.1e+02 1.8 0.0 21 45 359 383 355 386 0.88 7 7 0.0025 6.3 8.4 0.0 21 48 387 414 383 417 0.89
Sequence Information
- Coding Sequence
- ATGTTGAATATGTacgattttaagaaaatttgtcGCACTTGTGCGATTGAAGAAGAAAATTTGAAGCCACTGTTTGAagaaaatgatttaaatataccAACAATGATAATGGCGATTGCTGATATTCATGTACTCAAAGAAGATGGCCTTCCTCCAAATATTTGTTCCAACTGTATTGAATGCGTGAAAGCAGCATACCGATTTAAAAAGCAATGCGAAGAATTGGATAGCAAATTTGTATCAATGTTACGTTCCTTTCAACTGGATAGTGAATTTCAGGATGTGCCCGCAACAGAAATCGACAATAATAAACAGGATAATATTGATATCAGTAAAATCCTGTTTGATGATGAAATTCCGAAcgatacaaaaaatttcatttgctCAATTTGTGGTAAAACTTTCAAGCGACCACACACACTAACTCAACATTTACGCACGCATACAAAAGAAAAACCGTTCCAGTGTAAATACTGCGATAAATCTTTCAGTCAAAACGGCAACTTGATTCGTCACATGAGAATTCAtaccggtgaaaaaccgtatgcGTGTGAAATTTGTGGAAGTCGATTTATTCAACGGAAATCATTACAACGCCATTTGTTGAAACATAGTTCAACAATTtctcaatttaataaaaaacttaaacaaaAGGCGGATAAACCAAAGAAATACCAATGTGAGTACTGTTATAATTGGTATTCATCACGGGTTTCACTAAAAACCCACCAATTAATACatggtgaaaaaaaatttttgtgcagtTACTGCGGCAAAAGTTTTGTTAGCCATATTAATTTCTCTCAACACACACGAATACATGAAGAGAAAAGTTTCCTATGTAGCAACTGTGGAAAAAGTTTCAGCAGTCGATATCTTCTACTTCAGCACAGTCGAGTTCACactggcgaaaaaccattcGTTTGCAATATTTGTAATAAAGCCTTTTCACAAGCACCTCTTCTGCAAACCCATAAACGAGTGCACACAGGCGAACGACCTTTCGTCTGTGAAATTTGTAACAAGGCCTTTATgcaaaaaacacatttaatgTATCATATGCGAATACATACAGAGGAACATCCGTATGAATGTTCAGTATGTGGGAAAAAATTTCGATTGAATGGCAACTTAACTGTGCACATGCGCATTCACACCGGGGAAACCCCACATATTTGTTCCATTTGTAATAAAGGTTTTTATGACTCAAGTAATTTGAAAAAGCACGTGTTGAAAAAACATGATAAACAAATTCATAAGGATAATATgtga
- Protein Sequence
- MLNMYDFKKICRTCAIEEENLKPLFEENDLNIPTMIMAIADIHVLKEDGLPPNICSNCIECVKAAYRFKKQCEELDSKFVSMLRSFQLDSEFQDVPATEIDNNKQDNIDISKILFDDEIPNDTKNFICSICGKTFKRPHTLTQHLRTHTKEKPFQCKYCDKSFSQNGNLIRHMRIHTGEKPYACEICGSRFIQRKSLQRHLLKHSSTISQFNKKLKQKADKPKKYQCEYCYNWYSSRVSLKTHQLIHGEKKFLCSYCGKSFVSHINFSQHTRIHEEKSFLCSNCGKSFSSRYLLLQHSRVHTGEKPFVCNICNKAFSQAPLLQTHKRVHTGERPFVCEICNKAFMQKTHLMYHMRIHTEEHPYECSVCGKKFRLNGNLTVHMRIHTGETPHICSICNKGFYDSSNLKKHVLKKHDKQIHKDNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00239457;
- 90% Identity
- iTF_00239457;
- 80% Identity
- iTF_00239457;