Bneb018955.2
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000005.1:42060359-42061979[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 5.5e-05 0.021 16.2 0.7 9 41 118 147 115 150 0.86 2 9 0.00048 0.18 13.2 0.8 13 40 150 174 147 177 0.87 3 9 0.047 18 6.8 0.5 14 37 222 247 213 248 0.84 4 9 0.051 19 6.7 1.0 10 34 247 266 239 273 0.74 5 9 0.25 94 4.5 0.7 5 29 269 291 265 302 0.86 6 9 0.021 8.1 7.9 0.2 14 28 304 318 293 326 0.77 7 9 0.11 42 5.7 2.0 18 40 336 355 326 362 0.85 8 9 6.4 2.4e+03 0.0 3.3 14 29 360 375 353 386 0.66 9 9 0.027 10 7.6 2.6 13 43 387 414 380 415 0.83
Sequence Information
- Coding Sequence
- ATGTTGAATATGTacgattttaagaaaatttgtcGCACTTGTGCGATTGAAGAAGAAAATTTGAAGCCACTGTTTGAagaaaatgatttaaatataccAACAATGATAATGGCGATTGCTGATATTCATGTACTCAAAGAAGATGGCCTTCCTCCAAATATTTGTTCCAACTGTATTGAATGCGTGAAAGCAGCATACCGATTTAAAAAGCAATGCGAAGAATTGGATAGCAAATTTGTATCAATGTTACGTTCCTTTCAACTGGATAGTGAATTTCAGGATGTGCCCGCAACAGAAATCGACAATAATAAACAGGATAATATTGATATCAGTAAAATCCTGTTTGATGATGAAATTCCGAAcgatacaaaaaatttcatttgctCAATTTGTGGTAAAACTTTCAAGCGACCACACACACTAACTCAACATTTACGCACGCATACAAAAGAAAAACCGTTCCAGTGTAAATACTGCGATAAATCTTTCAGTCAAAACGGCAACTTGATTCGTCACATGAGAATTCAtaccggtgaaaaaccgtatgcGTGTGAAATTTGTGGAAGTCGATTTATTCAACGGAAATCATTACAACGCCATTTGTTGAAACATAGTTCAACAATTtctcaatttaataaaaaacttaaacaaaAGGCGGATAAACCAAAGAAATACCAATGTGAGTACTGTTATAATTGGTATTCATCACGGGTTTCACTAAAAACCCACCAATTAATACatggtgaaaaaaaatttttgtgcagtTACTGCGGCAAAAGTTTTGTTAGCCATATTAATTTCTCTCAACACACACGAATACATGAAGAGAAAAGTTTCCTATGTAGCAACTGTGGAAAAAGTTTCAGCAGTCGATATCTTCTACTTCAGCACAGTCGAGTTCACactggcgaaaaaccattcGTTTGCAATATTTGTAATAAAGCCTTTTCACAAGCACCTCTTCTGCAAACCCATAAACGAGTGCACACAGGCGAACGACCTTTCGTCTGTGAAATTTGTAACAAGGCCTTTATgcaaaaaacacatttaatgTATCATATGCGAATACATACAGAGGAACATCCGTATGAATGTTCAGTATGTGGGAAAAAATTTCGATTGAATGGCAACTTAACTGTGCACATGCGCATTCACACCGGGGAAACCCCACATATTTGTTCCATTTGTAATAAAGGTTTTTATGACTCAAGTAATTTGAAAAAGCACGTGTTGAAAAAACATGATAAACAAATTCATAAGGATAATATgtga
- Protein Sequence
- MLNMYDFKKICRTCAIEEENLKPLFEENDLNIPTMIMAIADIHVLKEDGLPPNICSNCIECVKAAYRFKKQCEELDSKFVSMLRSFQLDSEFQDVPATEIDNNKQDNIDISKILFDDEIPNDTKNFICSICGKTFKRPHTLTQHLRTHTKEKPFQCKYCDKSFSQNGNLIRHMRIHTGEKPYACEICGSRFIQRKSLQRHLLKHSSTISQFNKKLKQKADKPKKYQCEYCYNWYSSRVSLKTHQLIHGEKKFLCSYCGKSFVSHINFSQHTRIHEEKSFLCSNCGKSFSSRYLLLQHSRVHTGEKPFVCNICNKAFSQAPLLQTHKRVHTGERPFVCEICNKAFMQKTHLMYHMRIHTEEHPYECSVCGKKFRLNGNLTVHMRIHTGETPHICSICNKGFYDSSNLKKHVLKKHDKQIHKDNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00239521; iTF_00240325;
- 90% Identity
- iTF_00239521; iTF_00240325;
- 80% Identity
- iTF_00239521; iTF_00240325;