Bneb037632.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000023.1:3393480-3395009[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.1 5.3e+03 -1.0 0.0 22 44 126 148 117 152 0.74 2 12 3.3 8.4e+03 -1.6 0.0 21 33 181 193 171 208 0.75 3 12 0.049 1.2e+02 4.2 0.0 21 44 209 232 201 239 0.86 4 12 0.001 2.6 9.6 0.1 22 47 238 263 235 269 0.82 5 12 1.6 4.1e+03 -0.6 0.0 22 36 266 280 263 291 0.72 6 12 0.19 4.9e+02 2.3 0.1 21 43 293 315 277 320 0.85 7 12 0.012 30 6.2 0.1 12 43 321 352 313 363 0.83 8 12 0.021 53 5.4 0.1 23 44 360 381 356 389 0.83 9 12 0.42 1.1e+03 1.2 0.1 21 43 386 408 382 413 0.81 10 12 0.29 7.4e+02 1.8 0.0 22 43 415 436 412 441 0.89 11 12 0.0024 6.1 8.4 0.0 21 43 442 464 438 470 0.90 12 12 0.0074 19 6.9 0.0 22 44 471 493 466 497 0.86
Sequence Information
- Coding Sequence
- atgGAAGAAAATAACGATTTTGTACCAGTTCATGAAACGgtttatattaaatttgatcCAGAAGAAAGtctttttaaaactgaaacagaGGAAAATTCGCCAGTTACAAGTAATTGTTTTACCAACAAAATAAAACAGGGATCTTTTGAATCTCTTAATGAAAATTCCATGAAATTCGATGATTTGAAAAAGGAACGAGGTAACATAAGTGATCCATTGTTTTCGGGAACTTTACCTGTTCAAGTTAAAATTGAAACTAatgatgaaaattataaaaaatttgaattttttcccGAACAGTCTGTTAAAAAGGAATCGAAAAAAATACATGACAGaactgttttgagaaaaaaacataaaaaagttCGCACGGAAGAAAAATCACTCGAATGCAATGTatgcttaaaaaaatatgctagtttATCAAATTTAAGAACACATAAGAAAATTCACACGGGCGAGAGAGATTTTCAGTGCATTACTTGCTCGAAAACTTTTACCCAAGCAATagctttaaaaaaacatgaaagaactcATACGGGAGAAAAACCTTTTGAGTGtagtacatgttttaaaacatatgtagACAAGTCTGTCCtaaaaattcatgaaagaaTCCACACcggagaaaaaccatacaaatgtgcCACATGTTTCAAAGCATTTATTAAATCATCACAATTAAGGGTTCATGAGAAAATTCACACTGGTGAAAAGAATTTCAAATGCAATATTTGCTCCAAAGCATTTACTCAATCATCGGGCCTCAGACGACATATACTAAttcatacaggagaaaaaccttATGAATGCGATATATGTCTTAGAAAATTTGCCGATGGATCAGACCTTGTAAAACATAAACGAATCCACACAGGAGAAAGACCTTataagtgtaatatatgtttgaaAACATTCAGTCGTAGTCCACTTTTGAAGCAGCATGAAAGAGTTCACACGGGAGAAAAACCAGAAAAGAAGGAAAAACCAGAAAAACAATTCGAATGTAGTATATGTTTCCGAAAATTTGTCCACATACGCAGTTTAAAGGATCACGAGAAAACCCATACGGATGAAAAACATTTCAAATGCACCGTTTGCTTTAAATCATTTATTAAATCGGCACATTTGAGGCGGCATACACTAACTCACACGGGTGAAAAACCTCATGAGTGCAGTATATGTCTTAGAAAATTTGCCGATAGGTCAGATCTGAAAAAGCATGAAATAATTCACACGGGAGAGAGACCTTTTAAATGCAACTTATGCTTAAAAGCATTCAATCGTTCAGTGACACTAAAGAAACATGAAAGAGTTCATACGGGCGAAAAACCATTCGAATGTAGTATATGTTTCAGAAAATTCGGTCAATCATCACATTTGCGAGATCATGAGAGAACTCATACAGGTGAAAAAGCTTTTAGTTGTAATATTTGTCTGAAAACTTTTACCCAGTCAGGAAGTTTaagaaaacatgaaagaattcatgaAGAAGAAATGCTCGATATTGCTAACATAATGAATGAATGA
- Protein Sequence
- MEENNDFVPVHETVYIKFDPEESLFKTETEENSPVTSNCFTNKIKQGSFESLNENSMKFDDLKKERGNISDPLFSGTLPVQVKIETNDENYKKFEFFPEQSVKKESKKIHDRTVLRKKHKKVRTEEKSLECNVCLKKYASLSNLRTHKKIHTGERDFQCITCSKTFTQAIALKKHERTHTGEKPFECSTCFKTYVDKSVLKIHERIHTGEKPYKCATCFKAFIKSSQLRVHEKIHTGEKNFKCNICSKAFTQSSGLRRHILIHTGEKPYECDICLRKFADGSDLVKHKRIHTGERPYKCNICLKTFSRSPLLKQHERVHTGEKPEKKEKPEKQFECSICFRKFVHIRSLKDHEKTHTDEKHFKCTVCFKSFIKSAHLRRHTLTHTGEKPHECSICLRKFADRSDLKKHEIIHTGERPFKCNLCLKAFNRSVTLKKHERVHTGEKPFECSICFRKFGQSSHLRDHERTHTGEKAFSCNICLKTFTQSGSLRKHERIHEEEMLDIANIMNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00239516;
- 90% Identity
- iTF_00239516;
- 80% Identity
- iTF_00239516;