Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: -
Assembly: GCA_035578155.1
Location: JAPWDM010000006.1:19751408-19762602[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.1e-05 0.00058 21.5 1.7 1 23 356 378 356 378 0.98

2 9 1e-07 5.5e-06 27.9 1.6 3 23 386 406 384 406 0.98

3 9 0.00079 0.043 15.7 0.4 1 23 412 434 412 434 0.98

4 9 1.7e-05 0.00093 20.9 1.9 1 23 440 462 440 462 0.99

5 9 7.7e-05 0.0042 18.8 1.7 2 23 580 601 579 601 0.96

6 9 9.9e-09 5.4e-07 31.1 1.6 1 23 607 629 607 629 0.98

7 9 0.0022 0.12 14.2 0.6 3 23 637 657 635 657 0.97

8 9 0.0003 0.016 17.0 1.4 1 23 663 685 663 685 0.99

9 9 0.21 12 8.0 0.8 1 23 691 715 691 715 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.1e-05	0.00058	21.5	1.7	1	23	356	378	356	378	0.98
2	9	1e-07	5.5e-06	27.9	1.6	3	23	386	406	384	406	0.98
3	9	0.00079	0.043	15.7	0.4	1	23	412	434	412	434	0.98
4	9	1.7e-05	0.00093	20.9	1.9	1	23	440	462	440	462	0.99
5	9	7.7e-05	0.0042	18.8	1.7	2	23	580	601	579	601	0.96
6	9	9.9e-09	5.4e-07	31.1	1.6	1	23	607	629	607	629	0.98
7	9	0.0022	0.12	14.2	0.6	3	23	637	657	635	657	0.97
8	9	0.0003	0.016	17.0	1.4	1	23	663	685	663	685	0.99
9	9	0.21	12	8.0	0.8	1	23	691	715	691	715	0.95

Sequence Information

Coding Sequence: ATGGCGATCAATTTTTCCGCGTCATTCGCGGCTTGTTTAGCGGCAAATTTGAAAATGCCGCGACATGTCATGTACTGCATATCACAagATACGGGGGCGCCATACGTACTTTATAAAGATGGGATGGAGAGAAATCCACAAACGCAGTGGGGGGCAGGTTCACTTCCTGATTCTGGTTATAGTCATGGACTACCGCCACCCACCAGTAACACAAGCAGCCCACAACAGCAGTCGGCTCCTCAACAGTGTGCCACTGGCACAACTTCCATCAATAACACGGGGTCAAGTACAAATGATCCAATCTCATCGGGTCCGGCGTTAGGCTCACCAGTCCCTAGTCCATATCCCGCTGCTGTACCCGAATCACAAAATACAagcaataataacaataataattcgAATAACAATAACAGtagtaataacaataattctaataataataataacaatcaTCCGACAAACTTAAGTAACGATGAAGAACTTCACGATAACCAACATTCGCCAACAAACGCAACAAATGGCTTACCACCGTCGGACGTTCCTTCATCACAACAATCGTGCTTTAATCCCCCCGCCCCACCTTTACAAACTACAACCACCGCTCCAACGAACAACAACAGTACCAATCATAAtaatcatacaaataatatgCCAAATGGAAATCAACCAACAGATTTGCAAATTCAGTCTGGCCAACCTGCATATCCAGGCCAACAACCTCATTATTACAAAGATTCCAGAAATAATTCATTAAATACCAATCAAAATAACTCATTACAAAATTCACCAATGCCTCATCATATGTTAGGGAATATTCCCGGATTTTCTTCGGCGGCAGCATTACATTATCTCAAGCAACCTGGCGTTATGTTAGGATCTATGGGTGGCATCGAAGGTGGAACTGGAAATAGTCATCCTCTTGTTGGCGGCAGTGATGTGCTGTATGGTGGAAGTAATGGAATGCCTGACTTGCTGTCACCCTCACAACAGCTAGGTGGCAATCATCAGAATGGATTGAGcggcaaaattaaaaatagcaaTGGTATAAATGGCGACTTGcgtttatttaaatgtttaacatgtggaaaagattttaaacaaaaaagtacATTATTACAACATGAACGAATCCATACAGATTCTCGACCATACGGATGTCCTGAATGCGGTAAACGGTTTCGTCAACAGTCTCATCTAACTCAACATTTACGGATCCATGCAAATGAAAAACCATACGCCTGTGTGTACTGTGAAAGAACATTTCGACAACGAGCCATCCTTAATCAGCATCTGCGCATCCACTCGGGTGAGAAGCCGTACGAATGTAACGAATGCGGCAAGCATTTTCGTCAGAAGGCGATTCTCAATCAGCATGTCCGGACACACCAAGatGTGAGTCCTCATCTTGTTTTCAAAAATGGCATGACACCAACCTTATGGCCACAAGATGTACCGTTCCCCGCAGATGAAGGTAAAGAAGAAGTAACGTCTACGTATGGAGACGGAGATACAAATTCACAGCATCCCGATCAGAATCGTAATTCATGCTTTAGTCCCAGTGATCCTATACAATACCCCGCATACTTTAAAGATGCAAAAGGTATGAACCATAGCGTATTTGGTTCTGGTGCAAATTTTGGAGCattgcaatatttaaaaaatggcaTGAATGGCAACAAAGGCTGTCTACCAGATGTAATACAACACGGTCGATCAGCTGGGATGCCTCTGTACGTAAGGTGTCCAATTTGCCAAAAAGAGTTTAAACAAAAGTCGACGTTATTACAACATGGCTGTATACATATTGAATCACGGCCATATCCATGCCCCGAGTGTGGAAAACGTTTCCGACAACAGTCACATTTAACGCAACACTTACGAATACACACAAATGAAAAACCGTACGGTTGTGTATACTGTGGCAGAAATTTTAGACAACGAACGATATTAAATCAACATTTAAGGATCCACACAggtgaaaaaccgtacaaaTGTCAACAGTGTGGCAAAGATTTCCGACAAAAAGCAATACTAGATCAACATACAAGAACGCATCAAGGTGACCGTCCATTCTGCTGTCCAATGCCAAATTGTAGGAGACGATTTGGCACTGAACCAGAAGTGAAAAAACACATCGATAATCATATGAATCCCCATGCAGCAAAGAATAGAAGGAGTAGCACGGGCAGCTTGGATCTGAAACATTTAAGTGGGCCTGGTGGTGGTCCATTAAATAGTTCGTTGGATTTAAAACATTTGAGTGGATCAAATCCATTAAATGGTATGGATCGGAATGCCGCAGCATTATTACCCACCGTTGTGAAGCCTGAATTGTACTTCCCGCAATGTTATGCGCCAAATTTTAATGGTACGGGGAGTACGCCATCCTTCCCCGCGAGTGGACAAACAACTCCAGGTTCAACAACCGGCCCGGGGGCAACCAGTGAATTTAAAACACCTTCAAACGCTGCAATTCAGGCGCAGTGA
Protein Sequence: MAINFSASFAACLAANLKMPRHVMYCISQDTGAPYVLYKDGMERNPQTQWGAGSLPDSGYSHGLPPPTSNTSSPQQQSAPQQCATGTTSINNTGSSTNDPISSGPALGSPVPSPYPAAVPESQNTSNNNNNNSNNNNSSNNNNSNNNNNNHPTNLSNDEELHDNQHSPTNATNGLPPSDVPSSQQSCFNPPAPPLQTTTTAPTNNNSTNHNNHTNNMPNGNQPTDLQIQSGQPAYPGQQPHYYKDSRNNSLNTNQNNSLQNSPMPHHMLGNIPGFSSAAALHYLKQPGVMLGSMGGIEGGTGNSHPLVGGSDVLYGGSNGMPDLLSPSQQLGGNHQNGLSGKIKNSNGINGDLRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCERTFRQRAILNQHLRIHSGEKPYECNECGKHFRQKAILNQHVRTHQDVSPHLVFKNGMTPTLWPQDVPFPADEGKEEVTSTYGDGDTNSQHPDQNRNSCFSPSDPIQYPAYFKDAKGMNHSVFGSGANFGALQYLKNGMNGNKGCLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHLRIHTGEKPYKCQQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFGTEPEVKKHIDNHMNPHAAKNRRSSTGSLDLKHLSGPGGGPLNSSLDLKHLSGSNPLNGMDRNAAALLPTVVKPELYFPQCYAPNFNGTGSTPSFPASGQTTPGSTTGPGATSEFKTPSNAAIQAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01349075; iTF_01349880; iTF_00333130; iTF_01061074;
90% Identity: -
80% Identity: -