Basic Information

Insect: Sisyra nigra
Gene Symbol: -
Assembly: GCA_958496155.1
Location: OY292315.1:29784172-29793008[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.9e-06 0.00024 21.6 1.7 1 23 319 341 319 341 0.98

2 9 2.8e-08 2.3e-06 28.0 1.6 3 23 349 369 347 369 0.98

3 9 0.00021 0.017 15.7 0.4 1 23 375 397 375 397 0.98

4 9 4.7e-06 0.00038 21.0 1.9 1 23 403 425 403 425 0.99

5 9 2.1e-05 0.0017 18.9 1.7 2 23 543 564 542 564 0.96

6 9 2.7e-09 2.2e-07 31.2 1.6 1 23 570 592 570 592 0.98

7 9 0.00061 0.05 14.3 0.6 3 23 600 620 598 620 0.97

8 9 8.1e-05 0.0066 17.1 1.4 1 23 626 648 626 648 0.99

9 9 0.018 1.5 9.7 0.8 1 23 654 678 654 678 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.9e-06	0.00024	21.6	1.7	1	23	319	341	319	341	0.98
2	9	2.8e-08	2.3e-06	28.0	1.6	3	23	349	369	347	369	0.98
3	9	0.00021	0.017	15.7	0.4	1	23	375	397	375	397	0.98
4	9	4.7e-06	0.00038	21.0	1.9	1	23	403	425	403	425	0.99
5	9	2.1e-05	0.0017	18.9	1.7	2	23	543	564	542	564	0.96
6	9	2.7e-09	2.2e-07	31.2	1.6	1	23	570	592	570	592	0.98
7	9	0.00061	0.05	14.3	0.6	3	23	600	620	598	620	0.97
8	9	8.1e-05	0.0066	17.1	1.4	1	23	626	648	626	648	0.99
9	9	0.018	1.5	9.7	0.8	1	23	654	678	654	678	0.95

Sequence Information

Coding Sequence: ATGGCGATCAACTTCTCGGCGTCCTTCGCCGCCTGCCTGGCAGCCAACCTCAAGATGCCACGCCATGTCATGTACTGCATTTCACAAGATACTGGGGCGCCGTACGTTCTCTATAAAGATGGTATGGATCGCAGTCCTCAAACGCAATGGGGAGCTGGGTCACTTCCCGACTCCTCCAGTTACAGTCACGGTCTTCCTCCTCCCAATAGTCCTCAACAACAACAATCAACACCTTGTGGTTCCAGCAGCGCTCCAATTGACTCAGCTACGTCTGGAGGAAATGATCCTATCTCATCAGGACCGACTTTAGGTTCCCCCGTTCCTAGTCCCTATCCGGCTGCTGTTCCTGATTCTCAAACAACGACAAGCTCACACCCAACCAATTTAAGTCCCGACGACGATATCCATGATAATCAACAATCGCCGTCTGGTATATCAGCGACAGAAACACCCTCGTCGCAACAACCATGTTTCAATCCTCCCTCAGCACCGCTAAACACGTCGGGAACGAACAGTCATAACAATAATATCTCCAATTCGACGTCATCAAATAATCAACCTACTGATTTACAAGTTCAAAGTGGGCAACCAGCTTATCCTGGACAACAGCCTCATTACTATAAAGATTCACGGGGTAGTTCGTTAAATTCGAATCATAATAGTTCTTTGCAAAGTTCTCCAATGCCGCATCATATGTTGGGAAATATACCTGGAGGGTTTTCTTCGGCGGCCGCGTTacattatttgaaacaacctgGAGTTATGTTAGGCTCGTTGGGAGGAATTGATGGTAGTGCGGCTAATGGACATCATTTGGTTGGTGGTGGTGATGGGCTGTATGGCAGTGGTATGCCCGATTTATTGTCACCCTCGCAACAAATGGGTGGTGGTCACCATCAGGGTCTTGGGGGGAAAATGAAAAACGGGAATGGAATCAATGGCGATTTACGATTGTTCAAATGTTTGACATGCGGCAAAGATTTCAAACAGAAAAGTACATTGTTGCAACACGAACGAATTCATACGGATTCGAGGCCGTACGGGTGTCCCGAGTGTGGAAAGCGATTTCGACAGCAGTCCCATCTAACGCAACATCTTCGAATTCACGCCAACGAAAAACCTTACGCATGTGTTTATTGTGAGCGAACATTTCGACAGCGCGCCATCCTAAACCAACATCTACGCATCCACTCGGGTGAGAAGCCGTACGAATGTAACGAATGCGGCAAGCATTTTCGTCAGAAGGCGATACTCAATCAGCATGTCCGGACTCACCAAGaTGTCAGTCCACATTTAGTGTTCAAGAACGGCATGACACCAACGTTATGGCCGCAAGACATGCCATTTCCTGCTGATGAAGGCAAAGAAGAAGTGCAGTCGACGTATGGAGATGGAGATACCAACTCACAGCACCCTGATCAAAATCGTAACTCCTGTTTCAGTCCGTCAGATCCGATTCAATACCCCGCGTATTTCAAAGATGCCAAAGGCATGAATCATAGTGTCTTTGGCTCAGGAACTAATTTTGGGGCTTTacagtatttaaaaaatggtGTGACTGGGAACAAGGGCTGTTTACCGGACGTTATTCAACACGGACGATCTGCAGGCATGCCGCTATACGTGCGATGTCCAATTTGTCAAAAagaattcaaacaaaaatcaacTTTACTACAACATGGATGTATTCATATAGAATCGCGACCATATCCATGCCCTGAATGTGGAAAACGTTTCAGACAACAGTCGCATTTGACTCAACATTTACGGATACACACCAACGAAAAACCGTACGGATGTGTTTATTGTGGGAGAAACTTTAGACAACGGACAATTCTGAATCAACACTTACGAATACATACCGGTGAAAAACCTTATAAGTGTCAACAATGTGGTAAAGACTTTAGACAAAAGGCTATTTTGGACCAACATACACGCACGCATCAGGGCGATCGACCGTTTTGTTGCCCGATGCCGAATTGCCGAAGGAGATTTGCCACTGAGCCAGAGGTTAAAAAACATATTGATAATCACATGAATCCGCACGCGGCGAAAAATCGTCGAAGCAGCACTGGAAGTCTAGATATGAAACATTTAGGTGGTCCTGGCGGTGGACCTTTAAATGGTTCCTTAGACCTAAAACATCTAAGCGGAGCCAACACGTTAAATGGCATGGATCGTAACACGGCTGCAGCCCTTCTACCAGGGGTTGTTAAACCTGAATTATATTTCCCACAATGTTACGCGCCCAATTTCAATGGCAGCGGCAGCTCTGCGTCATTTCCACCAAGTGGACAAACAACGCCTGTGTCTTCGGGAGTCCCCGGGGCATCTAATGATTACAAATCACCAAATTCAGCGATACAAGCACAGTGA
Protein Sequence: MAINFSASFAACLAANLKMPRHVMYCISQDTGAPYVLYKDGMDRSPQTQWGAGSLPDSSSYSHGLPPPNSPQQQQSTPCGSSSAPIDSATSGGNDPISSGPTLGSPVPSPYPAAVPDSQTTTSSHPTNLSPDDDIHDNQQSPSGISATETPSSQQPCFNPPSAPLNTSGTNSHNNNISNSTSSNNQPTDLQVQSGQPAYPGQQPHYYKDSRGSSLNSNHNSSLQSSPMPHHMLGNIPGGFSSAAALHYLKQPGVMLGSLGGIDGSAANGHHLVGGGDGLYGSGMPDLLSPSQQMGGGHHQGLGGKMKNGNGINGDLRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCERTFRQRAILNQHLRIHSGEKPYECNECGKHFRQKAILNQHVRTHQDVSPHLVFKNGMTPTLWPQDMPFPADEGKEEVQSTYGDGDTNSQHPDQNRNSCFSPSDPIQYPAYFKDAKGMNHSVFGSGTNFGALQYLKNGVTGNKGCLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHLRIHTGEKPYKCQQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKNRRSSTGSLDMKHLGGPGGGPLNGSLDLKHLSGANTLNGMDRNTAAALLPGVVKPELYFPQCYAPNFNGSGSSASFPPSGQTTPVSSGVPGASNDYKSPNSAIQAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00239644;
90% Identity: iTF_01349880;
80% Identity: -