Basic Information

Insect: Nineta flava
Gene Symbol: -
Assembly: GCA_963920215.1
Location: OY986042.1:6171902-6186401[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 8.3e-06 0.00031 21.6 1.7 1 23 339 361 339 361 0.98

2 9 7.9e-08 2.9e-06 27.9 1.6 3 23 369 389 367 389 0.98

3 9 0.00061 0.023 15.7 0.4 1 23 395 417 395 417 0.98

4 9 1.3e-05 0.00049 20.9 1.9 1 23 423 445 423 445 0.99

5 9 6e-05 0.0022 18.9 1.7 2 23 561 582 560 582 0.96

6 9 7.7e-09 2.9e-07 31.1 1.6 1 23 588 610 588 610 0.98

7 9 0.0017 0.065 14.3 0.6 3 23 618 638 616 638 0.97

8 9 0.00023 0.0086 17.0 1.4 1 23 644 666 644 666 0.99

9 9 0.052 1.9 9.6 0.8 1 23 672 696 672 696 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	8.3e-06	0.00031	21.6	1.7	1	23	339	361	339	361	0.98
2	9	7.9e-08	2.9e-06	27.9	1.6	3	23	369	389	367	389	0.98
3	9	0.00061	0.023	15.7	0.4	1	23	395	417	395	417	0.98
4	9	1.3e-05	0.00049	20.9	1.9	1	23	423	445	423	445	0.99
5	9	6e-05	0.0022	18.9	1.7	2	23	561	582	560	582	0.96
6	9	7.7e-09	2.9e-07	31.1	1.6	1	23	588	610	588	610	0.98
7	9	0.0017	0.065	14.3	0.6	3	23	618	638	616	638	0.97
8	9	0.00023	0.0086	17.0	1.4	1	23	644	666	644	666	0.99
9	9	0.052	1.9	9.6	0.8	1	23	672	696	672	696	0.95

Sequence Information

Coding Sequence: ATGGCGATCAACTTTTCAGCATCATTTGCAGCCTGTTTGGCGGCAAATTTGAAAATGCCACGACATGTTATGTACTGCATATCACAagATACCGGGGCGCCTTACGTGTTATATAAAGATGGTATGGATAGAAATCCACAATCACAATGGGGTAGTTCATTACCAGATACCAATTACAGTAGTCATGGACTTCCGCCACCTACGAGTAGTCCACAACACCAGACTGCACACACGACACCTCAATGTGGATCTGGAACAGCACCTATAGATAATACAGGATCTAGCGGAAATGATCCCGTGCCAGCATTAGGATCACCTGTTGCAAGTCCATATCCAGCTGCTGTTCCCGAATCTCAAACTACaagcaataataacaataataataataataacagtaataataatcatcCAGCAAATTTAAGTACAGACGAAGATCTTCAAGATAATCAAACGTCACCGACAACAAATGCAAGTGGATTACCACCACCTGCTGAGGTTCCATCATCTCAACAATCATGTTTTAATCCTCCCGCTGCTCCATTACAGACTTCAACCTCCACAAGCAATAACCATAGCAGTCATGGGAGTAACTTGACAAATGGGAATCAACCCACAGATTTACAAGTGCAGTCTGGTCAACCAGCGTATCCTGGTCAACAGCCACATTATTATAAAGACTCGAGAAATGGAGCATTAAATTCAAATCAGAACAATTCTTTACAATCATCACCAATGTCTCATCATATGTTGGGAAATATACCTGGTGGATTTTCATCAGCTGCAGCTTTACATTATCTGAAACAACCCGGTGTGATGTTGGGATCGTTAGGTGGAATCGATGGCGGAGGTGGAAACAGTCATCCATTGGTTGGCGGTACAGATGGTCTATATGGTGGGAGCAACGGCATGCCTGATTTGTTGTCTCCGTCCCAACAGATGGGCGGTGGTCATCATCAAAATGGTCTTGGcgggaaaataaaaaacagtaaTGGTATTAATGGCGACTTgcgtttatttaaatgtttaacatGTGGAaaagattttaaacaaaaaagtacaTTATTACAACATGAACGCATCCATACAGATTCCCGTCCATATGGATGTCCAGAGTGCGGCAAACGTTTCCGGCAACAATCACATCTGACGCAGCATTTACGGATCCATGCAAATGAGAAACCCTACGCATGTGTGTACTGTGAGCGAACATTCCGACAACGAGCGATCCTGAACCAGCATCTGCGCATCCACTCGGGTGAGAAGCCGTACGAATGTAACGAATGCGGCAAGCATTTTCGTCAGAAGGCGATTCTCAATCAGCATGTCCGGACACACCAAGatgTAAGTCCacatctaatatttaaaaatggaatGACACCTACATTATGGCCATCAGATGTACCATTTCCAGGGGATGAAGGTAAAGAGGAAGTAGCGTCTACTTATGGGGATGGCGATTCACAACATCCCGATCAAAATCGAAATTCATGTTTTAGTCCAAGTGACCCGATGCAATAtcctgcatattttaaagatgcTAAAGGCATGAATCACAGTGTATTTGGTTCTGGTGCCAATTTCGGTGCTTTACAATACTTGAAAAATGGCATAAATGGTAATAAAGGATGTTTACCTGATGTGATACAACATGGACGATCAGCCGGAATGCCGCTTTACGTACGATGCCCAATTTGCCAAAaagaatttaaacaaaaatcaacaTTACTACAACATGGTTGCATACATATTGAATCAAGACCGTATCCTTGTCCTGAATGTGGTAAACGATTTAGACAACAATCACATTTAACACAACATTTACGAATACACACAAACGAAAAACCATATGGATGTGTGTATTGTGGGAGAAACTTTCGGCAAAGAACAATTTTAAACCAACACTTACGAATTCACACCGGTGAAAAACCATACAAGTGTCAACAATGTGGAAAAGATTTTCGTCAAAAAGCAATACTCGATCAACATACAAGAACCCATCAAGGAGATCGACCGTTCTGTTGTCCAATGCCAAATTGCAGGCGAAGATTTGCAACAGAAccagaagtaaaaaaacatattgataATCATATGAATCCACATGCTGCAAAAAATCGaagaagtagtagtagtagtctAGATTTGAAGCATTTAAGTGGTCCAACTGGTGGTCCATTAAATGGATCACTCGACTTAAAACATCTAACCAGTGGAAATCCATTGAATGGGATGGATCGTAATGCTGCATCTTTATTACCGGGTGTAGTTAAACCAGAACTATATTTCCCACAATGTTATGCCCCAAATTTTAATGGTAGTGGAACAACACCCTCGTTTCCGCCAAGTGGACAAACAACTCCCGGTACAACGTCAGCAGCTGCCGGAACATCGAACGAATTCAAGACACCAAATACAGCAATCCAAGCACAGTGA
Protein Sequence: MAINFSASFAACLAANLKMPRHVMYCISQDTGAPYVLYKDGMDRNPQSQWGSSLPDTNYSSHGLPPPTSSPQHQTAHTTPQCGSGTAPIDNTGSSGNDPVPALGSPVASPYPAAVPESQTTSNNNNNNNNNSNNNHPANLSTDEDLQDNQTSPTTNASGLPPPAEVPSSQQSCFNPPAAPLQTSTSTSNNHSSHGSNLTNGNQPTDLQVQSGQPAYPGQQPHYYKDSRNGALNSNQNNSLQSSPMSHHMLGNIPGGFSSAAALHYLKQPGVMLGSLGGIDGGGGNSHPLVGGTDGLYGGSNGMPDLLSPSQQMGGGHHQNGLGGKIKNSNGINGDLRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCERTFRQRAILNQHLRIHSGEKPYECNECGKHFRQKAILNQHVRTHQDVSPHLIFKNGMTPTLWPSDVPFPGDEGKEEVASTYGDGDSQHPDQNRNSCFSPSDPMQYPAYFKDAKGMNHSVFGSGANFGALQYLKNGINGNKGCLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHLRIHTGEKPYKCQQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKNRRSSSSSLDLKHLSGPTGGPLNGSLDLKHLTSGNPLNGMDRNAASLLPGVVKPELYFPQCYAPNFNGSGTTPSFPPSGQTTPGTTSAAAGTSNEFKTPNTAIQAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00239644;
90% Identity: iTF_00333130;
80% Identity: -