Bneb011623.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- tfip11
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000002.1:39888956-39901581[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-94 5.8e-90 303.0 16.1 1 275 403 674 403 674 0.97 2 2 0.0097 2.4e+02 2.6 0.2 239 272 683 716 675 719 0.83
Sequence Information
- Coding Sequence
- ATGTCGGACGACGAAGTAATAAAGTTTGAAATCACCGATTACGATTTGGACAACGAATTTAATGTAAACAGACCACGCCGACGACAAACAAAGCATCAACAGATATATGgtATTTGGGCTGACGAAAGCGATGACGACGATGAAGAGACCAGAAAAGGTTCTCGTTCAAGAATCAAACcgtcaaaaaattattcagcTCCAATAGGTTTTGTATCTGGCGGTGTTCAAAATCAAAGTAAAAAAGATGAAGATAAAGATGAAAACGAAGCAAAATCATCAGAAGATGATGAAGAAGCTATTACGttcaacaaaaaatcaaaaaattacgtGGCCAACAGTTCAAGTGACTCAGATGAAGAGAAGCCATCGTTTAGTAAAAGTGCTCAACAGTTTCAAAATTTCAGTGAAATTAATCAAGATATAGCCGGTTTGAGAAAAAGTGGACGACCACAGTTAAATACGTCACTAATCAACAAAGGCGTCGGTAATTGGGAGAAACACACTAAAGGAATTGGAGCTAAACTTTTGTTGCAAATGGGTTATGAACCTGGTAAAGGTTTAGGAAAAGATCTACAAGGTATATCAACTCCGGTTGAAGCACAGGTGCGAAAAGGTCGTGGCGCAATCGGTGCTTACGGACCAGAAAAAACTGCGAGTAAAGTTGAGGAAAAAATTGACGATTTGGCTGACGGAAAGAAATTCAaggataaacaaaataaatggaaaaaggATAATGCGGCCGGGAAGAAAAGTCGTTATTATTACAAAAGTGTTGATGATGTTATCGAAAGAGGGAAACAGCCGGGAGCTTTTCGAACTGCTGATGTTTTAAGtaaTTTGGGCAAAGTAAAAGTTATTGATATGACGGGCCCGGAACAAAGAATTCTCAGCGGTTATCATGCGTTAAGCGGTCCCAAGAAACCTCAAGGTGAAGGAGAATTATTTGAAGATGTTGTTCATAAGAAGTGTGCAAATTTTGCTCTACCAGAATTACAACATAATTTAGATCTTCTAGTGGATATGTGTGAACAGGATATTATTTGGGTGGACAGAAAAAGTCGACATTGTTCAGATCGCACAGTCGCTTTGGAACAAGAACGAAAAACCTTGAATGAAATCGTTGAAAAAGAAAGCAAACAAATCAACACTCTAGAATCCCTTTTGAATATAATCGAACGATTAATTGACCCTTCACACGCTCTTTCTTTAAGACAGGTAGCCGAAGAATTCAAAAATCTTCAAGAAAATTATCACGAAGAATATTTAATGTACGATCTAGGTGAACTGGCACCGGGCCTTGTTGGCCCACTAATAACATCAGCCCTAGTAAGTTGGTCCCCGTTATCAGCCCCGAATCAGTACACCGACGTATTTCAACAATGGCGGGAAATTTTAGACAAACCAAACCAGCGAGCTACGTTAGCCGTAAATTCGACCGCGTCCCACCCTTATAACAGCCTGGTCTGGACAACATGGATGCCTGTTATTCGAGCCACCGTCGCCACATGGAGTCCTAGAGATTGTGAACCGCTAATACGACTTCTTGAAACGTGGAAATCAATAATACCTATTTGGATTATGGACAACTTACTAGAACAAGTGGTGTTACCGCAAATTAACTCGGAAGTTTTACAATGGAATCCACTAACAGATACTGTTCCGATCCATATTTGGATTCATCCGTGGATTCCACTGATGGGAAATCGATTACAAGATACAGTTTATCCAATCATTGAAGACAAACTGGGAACCGCGTTAACAAGTTGGCATCCGTCTGATCGATCGGCCAAACTGATGCTAAGACCATGGCAAGCGGCAATGTCTTCTGGCTCGTTTGCCGCATTCTTACATAAATATATCTTACCAAAATTGCAAGTTTGCATGTCAAGTTTGATTATTAATCCACATCAGCAACATTtagatgcTTGGAATTGGGTGATGGACTGGTCAGATATGTTGAGTCCTCAGGCTATGGCGTTACTTCTTGATAAATGTTTCTTCCAACGATGGATCCAAACGTTGGCTTTGTGGTTGAATCAACAGCCGAATTACACAGAAGTAACCGATTGGTTTATTGGCTGGAAGGGAATGTTTGCGGAAGCACTTTTACAACAACCCTCTGTCAAAGaatattttcgaaaagcATTGGAACTGATGAACCGAGCAGTGAAACAGCCGTCGGGACAACAACCAGGTGCCCTAGAAACCGTCTCCTATCTGACAAATCTCGAAACAAATTTACCACCGCCTCCACCACCTTCAACTTCAGTCACTCATTCTGAGagTTTGGCACAAGCTGTACGGACGGCATCACAGATGCCGCAGAGTTTGAGCTTTAAGGATATAATTGCGAGAAATTGTGAAGAACGTGGAATACTTTTTGTTCCGATACCAAATCGTTATCGTGAAGCGAAACAAGTGTATCGAATTGGTAGCGGTTCGACGCAATGTTacattgataaaaatgttatttttgccACGACGAATGGCACAAATTGGGCCCcaacaaatttaaataacttaCTTGATATAgcttaa
- Protein Sequence
- MSDDEVIKFEITDYDLDNEFNVNRPRRRQTKHQQIYGIWADESDDDDEETRKGSRSRIKPSKNYSAPIGFVSGGVQNQSKKDEDKDENEAKSSEDDEEAITFNKKSKNYVANSSSDSDEEKPSFSKSAQQFQNFSEINQDIAGLRKSGRPQLNTSLINKGVGNWEKHTKGIGAKLLLQMGYEPGKGLGKDLQGISTPVEAQVRKGRGAIGAYGPEKTASKVEEKIDDLADGKKFKDKQNKWKKDNAAGKKSRYYYKSVDDVIERGKQPGAFRTADVLSNLGKVKVIDMTGPEQRILSGYHALSGPKKPQGEGELFEDVVHKKCANFALPELQHNLDLLVDMCEQDIIWVDRKSRHCSDRTVALEQERKTLNEIVEKESKQINTLESLLNIIERLIDPSHALSLRQVAEEFKNLQENYHEEYLMYDLGELAPGLVGPLITSALVSWSPLSAPNQYTDVFQQWREILDKPNQRATLAVNSTASHPYNSLVWTTWMPVIRATVATWSPRDCEPLIRLLETWKSIIPIWIMDNLLEQVVLPQINSEVLQWNPLTDTVPIHIWIHPWIPLMGNRLQDTVYPIIEDKLGTALTSWHPSDRSAKLMLRPWQAAMSSGSFAAFLHKYILPKLQVCMSSLIINPHQQHLDAWNWVMDWSDMLSPQAMALLLDKCFFQRWIQTLALWLNQQPNYTEVTDWFIGWKGMFAEALLQQPSVKEYFRKALELMNRAVKQPSGQQPGALETVSYLTNLETNLPPPPPPSTSVTHSESLAQAVRTASQMPQSLSFKDIIARNCEERGILFVPIPNRYREAKQVYRIGSGSTQCYIDKNVIFATTNGTNWAPTNLNNLLDIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01060632;
- 90% Identity
- -
- 80% Identity
- -