Basic Information

Insect: Brachylomia viminalis
Gene Symbol: -
Assembly: GCA_937001565.2
Location: CAKZJP020000155.1:1-3811[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 2.7 3.9e+02 3.4 0.7 2 11 32 41 31 54 0.77

2 29 0.0014 0.2 13.8 0.4 2 23 75 97 74 97 0.95

3 29 0.00078 0.11 14.6 2.5 1 23 102 124 102 125 0.96

4 29 1.4e-05 0.002 20.1 0.3 1 23 129 152 129 152 0.95

5 29 0.16 23 7.3 0.3 2 23 155 177 154 177 0.95

6 29 2.4 3.4e+02 3.6 1.5 2 20 183 201 182 206 0.90

7 29 0.0015 0.21 13.7 2.8 2 23 251 273 250 273 0.94

8 29 1.4 2.1e+02 4.3 0.1 2 23 302 324 301 324 0.94

9 29 0.012 1.7 10.8 0.0 1 23 346 369 346 369 0.91

10 29 3.5e-05 0.005 18.8 0.9 1 23 374 397 374 397 0.95

11 29 0.00011 0.016 17.2 0.3 1 23 403 426 403 426 0.96

12 29 0.0002 0.028 16.4 1.3 2 23 432 454 431 454 0.97

13 29 0.0021 0.3 13.2 4.6 1 23 458 481 458 481 0.97

14 29 0.012 1.7 10.9 0.8 2 23 488 509 487 509 0.97

15 29 0.003 0.42 12.7 3.2 1 23 557 579 557 579 0.96

16 29 0.039 5.6 9.2 0.1 3 23 608 629 608 629 0.96

17 29 0.0051 0.73 12.0 0.8 1 23 649 672 649 672 0.96

18 29 4.1e-05 0.0058 18.6 0.5 1 23 677 700 677 700 0.96

19 29 0.0027 0.38 12.9 2.3 1 23 705 728 705 728 0.98

20 29 0.00082 0.12 14.5 1.1 3 23 732 753 731 753 0.96

21 29 0.015 2.1 10.5 0.8 2 21 761 780 760 781 0.94

22 29 0.01 1.4 11.1 3.3 1 23 836 859 836 859 0.94

23 29 0.94 1.3e+02 4.9 0.0 2 23 932 955 931 955 0.94

24 29 1.9e-05 0.0027 19.6 0.1 3 23 962 983 961 983 0.94

25 29 0.0034 0.49 12.5 2.8 2 23 988 1010 987 1010 0.94

26 29 0.011 1.5 11.0 5.1 1 23 1015 1038 1015 1038 0.96

27 29 2.4e-05 0.0034 19.3 5.0 1 23 1042 1065 1042 1065 0.97

28 29 0.00027 0.039 16.0 0.3 2 23 1072 1093 1071 1093 0.96

29 29 9.8e-06 0.0014 20.5 0.6 1 23 1099 1121 1099 1121 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	2.7	3.9e+02	3.4	0.7	2	11	32	41	31	54	0.77
2	29	0.0014	0.2	13.8	0.4	2	23	75	97	74	97	0.95
3	29	0.00078	0.11	14.6	2.5	1	23	102	124	102	125	0.96
4	29	1.4e-05	0.002	20.1	0.3	1	23	129	152	129	152	0.95
5	29	0.16	23	7.3	0.3	2	23	155	177	154	177	0.95
6	29	2.4	3.4e+02	3.6	1.5	2	20	183	201	182	206	0.90
7	29	0.0015	0.21	13.7	2.8	2	23	251	273	250	273	0.94
8	29	1.4	2.1e+02	4.3	0.1	2	23	302	324	301	324	0.94
9	29	0.012	1.7	10.8	0.0	1	23	346	369	346	369	0.91
10	29	3.5e-05	0.005	18.8	0.9	1	23	374	397	374	397	0.95
11	29	0.00011	0.016	17.2	0.3	1	23	403	426	403	426	0.96
12	29	0.0002	0.028	16.4	1.3	2	23	432	454	431	454	0.97
13	29	0.0021	0.3	13.2	4.6	1	23	458	481	458	481	0.97
14	29	0.012	1.7	10.9	0.8	2	23	488	509	487	509	0.97
15	29	0.003	0.42	12.7	3.2	1	23	557	579	557	579	0.96
16	29	0.039	5.6	9.2	0.1	3	23	608	629	608	629	0.96
17	29	0.0051	0.73	12.0	0.8	1	23	649	672	649	672	0.96
18	29	4.1e-05	0.0058	18.6	0.5	1	23	677	700	677	700	0.96
19	29	0.0027	0.38	12.9	2.3	1	23	705	728	705	728	0.98
20	29	0.00082	0.12	14.5	1.1	3	23	732	753	731	753	0.96
21	29	0.015	2.1	10.5	0.8	2	21	761	780	760	781	0.94
22	29	0.01	1.4	11.1	3.3	1	23	836	859	836	859	0.94
23	29	0.94	1.3e+02	4.9	0.0	2	23	932	955	931	955	0.94
24	29	1.9e-05	0.0027	19.6	0.1	3	23	962	983	961	983	0.94
25	29	0.0034	0.49	12.5	2.8	2	23	988	1010	987	1010	0.94
26	29	0.011	1.5	11.0	5.1	1	23	1015	1038	1015	1038	0.96
27	29	2.4e-05	0.0034	19.3	5.0	1	23	1042	1065	1042	1065	0.97
28	29	0.00027	0.039	16.0	0.3	2	23	1072	1093	1071	1093	0.96
29	29	9.8e-06	0.0014	20.5	0.6	1	23	1099	1121	1099	1121	0.98

Sequence Information

Coding Sequence: ACGAAAGGCCACGGACCTTGCAGTGATAGCGACAGAGCTATACGACTAGTTAAATCAGCTGATGTAGAAATCAAAATAGATGTATCCGATGTTTCGTGCGAGATTTGTTCAAAAACTTTCCCATGTTTAAACGAAATTATTGACCATTTGATTTTTAAACACCAACTGCCGTATGCGAAAGATGTGGAGATGCTGTTATCAGCATACAGACTGTTAGATCTTCAGTGTCTCTTTTGCGACAAAACCTTCAATTACTTACGTAAATTAATCAGCCATGTGAATGTCGCTCATCCAAATAACAGCTTTGAGTGTGCCGAATGTAAaaagaactttaataaaaagAGGGACATGGATTCGCACATAAGAATCCATCATAAGAAATACTATTCTTGTACCAAATGCGATGAGACGTTTCCAACAAACTCCGCGTTACAGATTCATAGGTCTAACGCTCATTCTTCGACTTGTAACATCTGCTTCCAAGTATTTGCATCAGACGGCAAGCGGTTAGCTCATCAGAAATCTGACCACGATTCTAATCAGAGCCAATGTGGATTTTGCAATAAAGTTCAAACAACAAAGCAAGCCTTTATTAGACATGCTGCAAATTGCGAACATAAACCTCAGGAAGAAACTGTCATAATAGACGACGAAGACAAAAAAATAACCCTTAAAGAAATAAGAGAAAGTTTAGCATGCATCTTTAACATGACTACCGCACTTCCTTTCAAATTCTTTATGAATAGGTTACAATGTTTCTATTGCACGAAAAACTTCACCTCATGCGAGGACTTGAAAGAGCATACGTCGATAGAACATCCACACTGCGACATTTCCTTTAAGTCTATGAGGTTAAGGAACAGATATGACGGTGTCCAAATCAAAGTAGATACTTCTTCCTTGTCTTGTAGACTATGCAACATCCCCTTGCAGGATTTAAACGATTTGACTGACCATTTGAGCAAAGAGCATAAAGTGAAATTCGACTTTTCTGTCGAGAGTAATCTGCAGCCGTTTAAACTGATTAAAGACAACTACCCTTGCCCTATTTGTGGCGAAATCTACAGATATTTTGGCGTCTTACTCAAGCACGTTAGTGCGTCGCATAGCGGCAATAAACATATATGCATGTACTGCGGCAAAGCGTTCAGAACTGACCCTAATCTTAGAGCTCATATTTCAAGGCGTCATAAAATCACTGATAATCACAAATGCGGTGATTGTGATCAAGTTTTTGGGACTAATAATGCGTTAAGAATTCACCAAGGTACCGTTCACGGTACAAAATCAGTTCAATGCTTCGAATGTTCAGAAAAATTCACCTCAAAATATTCAATGCAACGACATTTGATCACGTCTCATGGTACGGGACATAAATGCACTTACTGTGATAAGCTTTTTACTAAAAACTCTTTTATGGTCAACCACGTAAGGAGGTCACATTTGAAGGAGAAAAACGTAGAATGTTCTGTGTGCTTCGAGAAATTTTTCGACAGTCAAAGGTTGAAAATGCATATGATTAAACACGTTGGAGAAAGAAACTTCCATTGTGATATTTGtgATGGTCTGCCAGGGCCGTACGAAGGCTGTACCTCTGAGCGTCGACGGAAAAACTTGAAAATACTGTTCAACCACACCACGATCATGCCATTTAAATGGCGGGGCAAATATCTTTGCTTCTATTGCGGAAAAAACTATACAGAATACACGGAATTTAGAAAACATACAAAATCCCACGGACTGTGCACCACTAAAGATTACTCCCTAAaactaattaaaggaaacaacatcgaaattaaaatcGACGTCTCAGAAATCGGTTGTGATATCTGCAATGAACCCTTTAGCAGATTCGAAGAAATAATCGATCATTTGATCAGCAAACACAATATGGAATACaacaaaaatatcgatatacCCTTCCAGGAATATCGACTAGTCGATTTTCGTTGTTTGTACTGCGAAGAACAGTTTTCTTATTTCGGATACTTGGTTAAACATGTTAACAACGTTCACCCGCAGAACTGTTTTATTTGTGACGATTGTGGAGTTACTTTCAATAAGAAAAGAGACTTGTCCATACATTTAAGGAATTATCACAGACAGGGTGGATACCCCTGCGATTTGTGCTTGAAGAACTTCGAAACTCGCCTTATGTTGCGGAGGCATCATAATACCATGCATTTTAGGCACTGTAAGAGCTGCGGTTTGCGTTTCGCCTCCCTCTCTCTTTTACAAAAACATGTACAAGTTGATCATCCCCAAAATGAGAGTAATATGAAGTGCAGTTACTGCTCCAAAGAGTTTCACACTGCTTTAGGTTTAAGACAGCACATAAGCAAATGTAAGGTCAAAATTATTTCTCAGGTCGAACCCCCCCATACTTCTTTTCTAAACGACAGTAACATAGAACctaagaaaaaacaaaatatactaCAAATAAGACAGAATATACAGTGCGTACTCAACATGTCGACTGCTGTGCCTTTCAAATTCTTTTCCAAATACTCCTGCTTTTATTGCTCAAAGAAATTTGTTGAATTTGATGAGTTACGCCACCATACTAGCCTTGAACATACTGAATGCGATTTGAAGTCCAAATGCATGAAGAAATGCAAAGGAGAAAGGATAGCTGTCAAAATTGACATATCTGCGTTAGCTTGTAAAATATGTTGCCTCCCTATGCCTAATTTAGAAGATTTAATCAACCATTTAATAAACGAACATAAAGCGAACTATGATACTTCAATTCCCGGGTGTTTAGAGCCGTTCCGGCTTATAAAAGACAACATGCCTTGTCCTATATGCCCGGATACCGTCTTCCGATACTTCGGCATTTTGCTCCGACACATGAACTCCGAACACAGCAACAACAACCGAATCTGTGACTTCTGCGGTCGAAGCTTCAGGAACGCGGCGAATCTGAACGTGCACATAACTTACGCACACACAGGTTCCTGCGAATGTGACATTTGTGGAGTCAAATATAAGAACCAATGGTGCTTGGCGCGACATAGAGCGAGGACACACGATGCGAAGGACCACAAATGTCCAAAATGTCCCGAGCAGTTCCAGTCACAGTACCATAAACAGAAACACTTAATAAAAATGCATAATGTAGGACATAAGTGCAGTTACTGCGGGAAGATGTTCACAAGAAACTCTTTCATGAAAGACCATGTTAGGCGAACACATTTGAAGGAAAAGAACATTCCTTGCTCCATTTGTAATGAGAAGTTTTTCGACAATTATCTTTTGAGGATGCATATGGTGAAACACGAGGGGGATAGGAAATTTAGTTGCACTGTTTGTGGAAAAGCCTTTTTAAGACGAAGTAATTTGAGTTCGCATATGGAGATGCATAAAAAGTATGGCCATGTGCAGTTGCAGATTTAA
Protein Sequence: TKGHGPCSDSDRAIRLVKSADVEIKIDVSDVSCEICSKTFPCLNEIIDHLIFKHQLPYAKDVEMLLSAYRLLDLQCLFCDKTFNYLRKLISHVNVAHPNNSFECAECKKNFNKKRDMDSHIRIHHKKYYSCTKCDETFPTNSALQIHRSNAHSSTCNICFQVFASDGKRLAHQKSDHDSNQSQCGFCNKVQTTKQAFIRHAANCEHKPQEETVIIDDEDKKITLKEIRESLACIFNMTTALPFKFFMNRLQCFYCTKNFTSCEDLKEHTSIEHPHCDISFKSMRLRNRYDGVQIKVDTSSLSCRLCNIPLQDLNDLTDHLSKEHKVKFDFSVESNLQPFKLIKDNYPCPICGEIYRYFGVLLKHVSASHSGNKHICMYCGKAFRTDPNLRAHISRRHKITDNHKCGDCDQVFGTNNALRIHQGTVHGTKSVQCFECSEKFTSKYSMQRHLITSHGTGHKCTYCDKLFTKNSFMVNHVRRSHLKEKNVECSVCFEKFFDSQRLKMHMIKHVGERNFHCDICDGLPGPYEGCTSERRRKNLKILFNHTTIMPFKWRGKYLCFYCGKNYTEYTEFRKHTKSHGLCTTKDYSLKLIKGNNIEIKIDVSEIGCDICNEPFSRFEEIIDHLISKHNMEYNKNIDIPFQEYRLVDFRCLYCEEQFSYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLSIHLRNYHRQGGYPCDLCLKNFETRLMLRRHHNTMHFRHCKSCGLRFASLSLLQKHVQVDHPQNESNMKCSYCSKEFHTALGLRQHISKCKVKIISQVEPPHTSFLNDSNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTSLEHTECDLKSKCMKKCKGERIAVKIDISALACKICCLPMPNLEDLINHLINEHKANYDTSIPGCLEPFRLIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQLQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01527571;
90% Identity: iTF_01527571; iTF_00925043; iTF_00238007;
80% Identity: -