Lnic038065.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Luperina nickerlii
Gene Symbol
-
Assembly
GCA_963855955.1
Location
OY979692.1:5513892-5517854[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.13 14 7.6 0.7 1 23 32 54 32 54 0.95
2 30 0.32 35 6.3 0.1 2 23 82 104 81 104 0.89
3 30 0.00015 0.017 16.8 0.4 2 23 125 147 124 147 0.96
4 30 0.00019 0.021 16.5 2.1 1 23 152 174 152 175 0.96
5 30 6.6e-05 0.0073 17.9 1.7 1 23 179 202 179 202 0.95
6 30 0.17 19 7.2 0.3 2 23 205 227 204 227 0.95
7 30 0.066 7.3 8.5 1.3 2 20 233 251 232 256 0.91
8 30 0.00091 0.1 14.3 3.3 1 23 301 324 301 324 0.96
9 30 1.3 1.4e+02 4.4 0.1 2 23 353 375 352 375 0.94
10 30 0.0044 0.49 12.2 0.0 1 23 397 420 397 420 0.92
11 30 3.6e-05 0.004 18.7 0.9 1 23 425 448 425 448 0.95
12 30 8.7e-05 0.0096 17.5 0.5 1 23 454 477 454 477 0.96
13 30 0.00021 0.024 16.3 1.3 2 23 483 505 482 505 0.97
14 30 0.076 8.4 8.3 3.7 1 23 509 532 509 532 0.95
15 30 0.41 46 6.0 0.5 2 23 539 560 538 560 0.96
16 30 0.003 0.34 12.7 3.2 1 23 608 630 608 630 0.96
17 30 0.04 4.5 9.1 0.1 3 23 659 680 659 680 0.96
18 30 0.0053 0.59 11.9 0.8 1 23 700 723 700 723 0.96
19 30 4.2e-05 0.0047 18.5 0.5 1 23 728 751 728 751 0.96
20 30 0.0016 0.17 13.6 0.9 1 23 756 779 756 779 0.96
21 30 0.00084 0.094 14.4 1.1 3 23 783 804 782 804 0.96
22 30 0.013 1.4 10.7 1.3 2 21 812 831 811 832 0.94
23 30 0.014 1.5 10.6 3.4 1 23 887 910 887 910 0.93
24 30 0.97 1.1e+02 4.8 0.0 2 23 983 1006 982 1006 0.94
25 30 2e-05 0.0022 19.5 0.1 3 23 1013 1034 1012 1034 0.94
26 30 0.0035 0.39 12.5 2.8 2 23 1039 1061 1038 1061 0.94
27 30 0.011 1.2 10.9 5.1 1 23 1066 1089 1066 1089 0.96
28 30 2.4e-05 0.0027 19.3 5.0 1 23 1093 1116 1093 1116 0.97
29 30 0.00028 0.031 15.9 0.3 2 23 1123 1144 1122 1144 0.96
30 30 1e-05 0.0011 20.5 0.6 1 23 1150 1172 1150 1172 0.98

Sequence Information

Coding Sequence
ATGACAAAGCACAGTGCTAGTTATCTAAGGAGGAGAAATCTGCAAATATTGCTCAACAATACAACGTTGATACCTTTTAAATGGCGCGGCAAATATCTCTGCTTTTATTGCGGGGACGATACGACGACGCCCGATCGTCTCCGGAAACACACGAAAGGCCACGGACCTTGCAGTGATAGCGACAGAGCTATACGACTAGTTAAATCAGCTGATATAGAAATCAAAATAGATGTATCCGAGGTTTCGTGCGAGATTTGTTCAGAAACGTTCCCCTTTTTAGACGAAATTATTGACCATTTGATTTTTAAACACCAACTGCCTTATGCGAAGGACGTAGAGATGCTATTATCAGCATACAGACTGTTAGATCTTCAGTGTCTCCTTTGCGATAAAACTTTCAATTACTTACGTAAATTAATCAGCCATATGAATGTCGCTCATCCAAACAACAGTTTTGAGTGTGccgaatgtaaaaaaatatttaataaaaagaggGATTTGGATTCGCACATAAGACTCCATCATAAGAAATGCTATACTTGTACGAAATGCGATGAAACGTTCCCAACAAACTCCGCGTTACATATCCACAGGTCTAACTCTCATTCGTCGACTTGTAACATCTGCTTCCAAGTGTTTGCGTCAGACGGTAAGCGGTTAGCTCATCAGAAATCTGACCATGATTATAATCAGAGCCAATGTGGATTCTGCAATAAAGTTCTAACAACAAAACAGGCCTTTATCAGACATGCTGCAAATTGCGAACATAAGCCTCTGGAAGATACTGTCATAATAGATGACGATGAAGACAAAAAAGTATCCGTCAAAGAAATAAGAAAATGTTTAGCTTGCATCTTTAACATGACAACCGCACTTCCTTTCAAATTCTTTATGAATAGGTTTCGATGTTTCTATTGCACGAAAGACTTCACCTCGTGCGAAGATTTAAAAGAACATACTTTGGTAGAACATCCTCACTGCGATATATCCTTTAAGTCTATGAGATTAAGGAACAGATATGACGGTGTCCAAATTAAAGTTGATACTTCTTCTTTGTCTTGTAGACTATGCCAAGTCACCTTGGAAGATTTGAACGATTTGATTGACCATTTGAGCAAAGAGCATAAGGTGAAATGCGACTTTTCTGTCGAGAGTAATCTGCAGCCGTTCAAACTGATTAAAGACAACTACCCTTGCCCTATTTGCGGGGAAGTCTACAGATATTTTGGCGTCCTACTCAAGCACGTTAGTGCGTCTCATAGTGGCAATAAACATATTTGCATGTACTGCGGCAAAGCGTTCAGAACTGACCCTAATCTTAGAGCTCACATTTCAAGGCGTCATAAAATCGCTGATAATCACAAGTGCGGAAACTGCGATCTAGTTTTTGGAACTAATAGTGCATTGAGAAATCATCAAGGCACCGTTCACGGTACAAAATTAGTTAAATGCTTTGAATGTTCAGAAAAATTCACCTCACAATATTCAATGCAACGACACTTAATCACCTCTCATGGTACGGGACATAAATGCATTTACTGTGATAAATTATTCACTAAAAACTCTTTCATGATCAACCACGTAAGGAGGTCTCATTTGAAAGAGAAAAATGTAGAATGTTCTGTGTGCTTCGAGAAATTTTTCGACGGTCAAAGGCTGAAAATGCATATGGTTAAACACGTTGGAGAAAGAAACTTTCATTGTGATATTTGTGATGGTCTGCCAGGGCCGTACGAAGGCTGTACCTCTGAGAGACGCCGGaaaaacttgaaaatactgttcaaCCATACAACAATCATGCCATTTAAATGGCGGGGCAAATACCTTTGCTTCTACTGCGGAAAAAACTATACCGAATACACAGAATTTAGAAAGCATACAAAATCCCACGGACTATGCACCACTAAAGATTACTCCCTCAAACTAATCAAAGGAAACAACATCGAAATTAAAATCGACGTCTCAGAAATCGGTTGTGATATCTGCAATGAACCCTTCAGCAGATTCGAAGAAATAATCGATCATTTGATCAGTAAACACAACATGGAATACAACAAAAATATCGATATACCCTTCCAGGAATACCGATTAGTCGATTTTCGATGTTTGTACTGCGAAGAACAGTTTTCTTATTTCGGATATTTGGTTAAACATGTTAACAACGTCCACCCGCAGAACTGTTTTATTTGTGATGATTGTGGAGTTACTTTCAACAAGAAAAGAGACTTGTCTATACATTTGAGGAATTATCACAGACAGGGAGGATACCCCTGCGATTTGTGCTTGAAGAACTTCGATACTCGCCTTATGTTGCGGAGGCATCAAAATAACATGCATTTTAGGCACTGTAAGAGCTGTGGCTTGCGTTTTGCGTCCCTTTCTCTTTTACAAAAACATGTCCAAGTTGATCACCCCCAAAATGAGAGTAATATGAAGTGTAGTTACTGCTCCAAAGAGTTCCACACTTCTTTAGGTTTAAGACAGCATATAAGCAAATGTAAGGTCAAAATAATTTCTCAGGTCGAACTCCCCAACACTTCTTTTCTAAATGACAATAACATAGAACCTAAGAAAAAACAGAATATACTACAAATACGACAAAACATACAGTGCGTACTCAATATGTCGACTGCTGTGCCTTTCAAATTCTTTTCCAAATATTCCTGCTTTTATTGCTCAAAGAAATTCGTTGAATTTGACGAGCTACGTCACCACACTACCCTTGAACATCCTGTATGCGATTTGAAATCAAAATGCATGAAGAAATGCAAGGGAGAAAGAATAGCCGTTAAAATTGACATATCTGCATTAGCTTGTAAAATATGTTGCCTCCCTATGCCTAATTTAGAAGATTTAGTCAAGCATTTAATAAACGAACATAAGGCGAACTATGATACTTCAATTCCTGGGTGTTTAGAGCCTTTCCGGGTTATAAAAGACAACATGCCATGTCCCATATGCCCGGATACTGTCTTCCGATACTTCGGCATTTTACTTCGACATATGAACTCCGAACACAGCAACAACAACCGGATCTGTGACTTCTGCGGCCGAAGTTTCCGTAACGCGGCGAATCTAAACGTGCATATAACCTACGCACACACAGGTTCCTGCGAATGTGATATTTGTGGGGTCAAATACAAGAACCAGTGGTGTTTGGCGCGACACAGAGCGAGGACACACGATGCGAAGGACCACAAATGTCCTAAATGTCCCGAGCAGTTCCAATCGCAGTaccataaacaaaaacatttaataaaaatgcataATGTGGGGCATAAGTGCAGCTATTGCGGAAAAATGTTTACTAGAAACTCCTTCATGAAAGATCATGTTAGGCGTACGCATTTAAAGGAAAAAAACATTCCTTGTTCCATTTGTAATGAAAAGTTTTTCGATAATTATCTTTTGAGGATGCATATGGTGAAACATGAGGGGGATAGGAAATTTAGTTGCACTGTTTGTGGAAAAGCCTTTTTGAGACGAAGTAATTTGAGCTCGCATATGGAGATGCATAAAAAGTATGGGCATGTGCAGTTGCAGATTTAA
Protein Sequence
MTKHSASYLRRRNLQILLNNTTLIPFKWRGKYLCFYCGDDTTTPDRLRKHTKGHGPCSDSDRAIRLVKSADIEIKIDVSEVSCEICSETFPFLDEIIDHLIFKHQLPYAKDVEMLLSAYRLLDLQCLLCDKTFNYLRKLISHMNVAHPNNSFECAECKKIFNKKRDLDSHIRLHHKKCYTCTKCDETFPTNSALHIHRSNSHSSTCNICFQVFASDGKRLAHQKSDHDYNQSQCGFCNKVLTTKQAFIRHAANCEHKPLEDTVIIDDDEDKKVSVKEIRKCLACIFNMTTALPFKFFMNRFRCFYCTKDFTSCEDLKEHTLVEHPHCDISFKSMRLRNRYDGVQIKVDTSSLSCRLCQVTLEDLNDLIDHLSKEHKVKCDFSVESNLQPFKLIKDNYPCPICGEVYRYFGVLLKHVSASHSGNKHICMYCGKAFRTDPNLRAHISRRHKIADNHKCGNCDLVFGTNSALRNHQGTVHGTKLVKCFECSEKFTSQYSMQRHLITSHGTGHKCIYCDKLFTKNSFMINHVRRSHLKEKNVECSVCFEKFFDGQRLKMHMVKHVGERNFHCDICDGLPGPYEGCTSERRRKNLKILFNHTTIMPFKWRGKYLCFYCGKNYTEYTEFRKHTKSHGLCTTKDYSLKLIKGNNIEIKIDVSEIGCDICNEPFSRFEEIIDHLISKHNMEYNKNIDIPFQEYRLVDFRCLYCEEQFSYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLSIHLRNYHRQGGYPCDLCLKNFDTRLMLRRHQNNMHFRHCKSCGLRFASLSLLQKHVQVDHPQNESNMKCSYCSKEFHTSLGLRQHISKCKVKIISQVELPNTSFLNDNNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTTLEHPVCDLKSKCMKKCKGERIAVKIDISALACKICCLPMPNLEDLVKHLINEHKANYDTSIPGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQLQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01527571;
90% Identity
iTF_00238006;
80% Identity
-