Bman012233.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- -
- Assembly
- GCA_003987935.1
- Location
- NW:320039-322020[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.22 1.4e+03 -1.0 1.9 20 42 144 166 126 172 0.66 2 7 6.7e-05 0.42 10.3 0.1 20 48 172 200 161 202 0.90 3 7 0.0037 23 4.7 0.1 21 48 232 258 226 258 0.88 4 7 0.00028 1.8 8.3 0.1 16 43 255 282 253 287 0.90 5 7 0.00078 4.9 6.9 0.0 21 45 288 312 285 318 0.89 6 7 0.27 1.7e+03 -1.3 0.1 18 30 341 353 333 363 0.81 7 7 0.0011 6.6 6.4 0.3 6 48 354 396 351 400 0.91
Sequence Information
- Coding Sequence
- AtggataaaaatatttgtagattATGTTGCGAGAATAGAGCCGAAACTAACATATTTGAAAGTAAACAAGGAGAAATTAGCGTAAGttcaaaaataatgtattgCTGTTCAGGTCTTCAAATAAAATCGGATGATGGTTTGCCGTCTAAAATATGTGAATTTTGCAAGAAAGAGCTCGATGCTTGTTactatttcgttttaaaatgtGAAGCAGCAGATAAGAGATTACGATTGAAAATTGCAGAAAAACCAAAATTTGACGCGACTAAGACCGAAATCAAATTGGAAGCCGACGATGACGATAATCATTGGGACGAAGAGACATTCGCGCTTAGACTGTGCGATGTTGATATTAAGTCAGAATTTACAGAACAGAAAGCTGAGGTACGAAAGAAAAGACGTTATACCAAACGTACTAAATATAAAAGGCATCAAGATGGTAGCTGTAAATGCCCAGTTTGTGGTAGAGTTTGCATAAACCCGTCCACTCTGACAATCCACATGCGAGTACACAGTAGCGAAAAATCCTTCTCATGTACAGTATGCAATAGTAAATATAAAGATGCAGGCAATCTCAAACGGCATATGAACAGAAAACATGATCCGATGAGGCAAAGACAGTTTGTGTGTGAAAATTGTGGTAAAGCATTCTATTCTAAAAGAGATGTTGAAATCCATATGAGGACGCACACCGGGGAGACACCTTACACTTGTAATGCATGTGGAAAGAGTTTTACACAGGCAACTTCATTGTTTCGCCATAGATTAAGACATGAGAGTGAAAAGACTTATTCATGTACTATATGTAACAAACTTTTCCGAACCAAAGACGGATTGAGGAACCACGCATTAGTACATACATCAGAAAAGAAGTTTTCGTGTCCTATTTGTAATATGTCTTTTAAATATAAGAACAAtgtacacaaacacataaaaaatCATTCTGAGCCTAAGCGTTTTGTTTGCAACTACTGTGGGAGATCATTCAGTATGAAAGGTGGCTTGAAGAGTCACATAGACAGACAGCATTCTGAGAAATCAGGTTATTGTAATGTATGTTCAAAACATGTACCAAACTTAGAAGTTCATAGTTGGAAGCACACAGGGCAACGGCCATTAAAATGTGAACTGTGTTCAAGTAGCTTTTCACAGCTTAAAGCTTTGACACATCATGTTAACTTCAAACATAAGCAAACCTCAAAACACAAATGCCTTGTTGCCGGCTGTGAAATGGCATTTCCATCTAAACCAATGCTAGATTACCACACTGCCAAAGTACACAGTACAGACATTCCATTTCCTTGTGACCGATGCTCTAGGGGTTTCTACAGGAAGAATGACCTATCTCGGCATATGATTGGAACCCATAAGGAAAAGTTACTGTGA
- Protein Sequence
- MDKNICRLCCENRAETNIFESKQGEISVSSKIMYCCSGLQIKSDDGLPSKICEFCKKELDACYYFVLKCEAADKRLRLKIAEKPKFDATKTEIKLEADDDDNHWDEETFALRLCDVDIKSEFTEQKAEVRKKRRYTKRTKYKRHQDGSCKCPVCGRVCINPSTLTIHMRVHSSEKSFSCTVCNSKYKDAGNLKRHMNRKHDPMRQRQFVCENCGKAFYSKRDVEIHMRTHTGETPYTCNACGKSFTQATSLFRHRLRHESEKTYSCTICNKLFRTKDGLRNHALVHTSEKKFSCPICNMSFKYKNNVHKHIKNHSEPKRFVCNYCGRSFSMKGGLKSHIDRQHSEKSGYCNVCSKHVPNLEVHSWKHTGQRPLKCELCSSSFSQLKALTHHVNFKHKQTSKHKCLVAGCEMAFPSKPMLDYHTAKVHSTDIPFPCDRCSRGFYRKNDLSRHMIGTHKEKLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00236835;
- 90% Identity
- iTF_00236835;
- 80% Identity
- iTF_00236051;