Basic Information

Insect: Bombyx mandarina
Gene Symbol: -
Assembly: GCA_003987935.1
Location: NW:320039-322020[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.6e-07 1.2e-05 25.0 1.3 1 23 149 171 149 171 0.97

2 11 7.7e-06 0.00035 20.4 1.6 1 23 177 200 177 200 0.97

3 11 3.7e-07 1.7e-05 24.5 0.4 1 23 208 230 208 230 0.98

4 11 8.4e-07 3.8e-05 23.4 1.6 1 23 236 258 236 258 0.98

5 11 5.7e-06 0.00026 20.8 0.6 1 23 264 286 264 286 0.97

6 11 1.8e-05 0.00083 19.2 3.5 1 23 292 314 292 314 0.98

7 11 1.1e-06 5.2e-05 23.0 0.5 1 23 320 343 320 343 0.96

8 11 7.9 3.6e+02 1.5 0.2 3 16 350 360 348 364 0.54

9 11 0.0052 0.23 11.5 2.3 2 23 374 396 373 396 0.93

10 11 0.34 15 5.8 0.1 1 23 402 427 402 427 0.93

11 11 6.1e-05 0.0028 17.5 0.7 1 23 433 456 433 456 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.6e-07	1.2e-05	25.0	1.3	1	23	149	171	149	171	0.97
2	11	7.7e-06	0.00035	20.4	1.6	1	23	177	200	177	200	0.97
3	11	3.7e-07	1.7e-05	24.5	0.4	1	23	208	230	208	230	0.98
4	11	8.4e-07	3.8e-05	23.4	1.6	1	23	236	258	236	258	0.98
5	11	5.7e-06	0.00026	20.8	0.6	1	23	264	286	264	286	0.97
6	11	1.8e-05	0.00083	19.2	3.5	1	23	292	314	292	314	0.98
7	11	1.1e-06	5.2e-05	23.0	0.5	1	23	320	343	320	343	0.96
8	11	7.9	3.6e+02	1.5	0.2	3	16	350	360	348	364	0.54
9	11	0.0052	0.23	11.5	2.3	2	23	374	396	373	396	0.93
10	11	0.34	15	5.8	0.1	1	23	402	427	402	427	0.93
11	11	6.1e-05	0.0028	17.5	0.7	1	23	433	456	433	456	0.94

Sequence Information

Coding Sequence: AtggataaaaatatttgtagattATGTTGCGAGAATAGAGCCGAAACTAACATATTTGAAAGTAAACAAGGAGAAATTAGCGTAAGttcaaaaataatgtattgCTGTTCAGGTCTTCAAATAAAATCGGATGATGGTTTGCCGTCTAAAATATGTGAATTTTGCAAGAAAGAGCTCGATGCTTGTTactatttcgttttaaaatgtGAAGCAGCAGATAAGAGATTACGATTGAAAATTGCAGAAAAACCAAAATTTGACGCGACTAAGACCGAAATCAAATTGGAAGCCGACGATGACGATAATCATTGGGACGAAGAGACATTCGCGCTTAGACTGTGCGATGTTGATATTAAGTCAGAATTTACAGAACAGAAAGCTGAGGTACGAAAGAAAAGACGTTATACCAAACGTACTAAATATAAAAGGCATCAAGATGGTAGCTGTAAATGCCCAGTTTGTGGTAGAGTTTGCATAAACCCGTCCACTCTGACAATCCACATGCGAGTACACAGTAGCGAAAAATCCTTCTCATGTACAGTATGCAATAGTAAATATAAAGATGCAGGCAATCTCAAACGGCATATGAACAGAAAACATGATCCGATGAGGCAAAGACAGTTTGTGTGTGAAAATTGTGGTAAAGCATTCTATTCTAAAAGAGATGTTGAAATCCATATGAGGACGCACACCGGGGAGACACCTTACACTTGTAATGCATGTGGAAAGAGTTTTACACAGGCAACTTCATTGTTTCGCCATAGATTAAGACATGAGAGTGAAAAGACTTATTCATGTACTATATGTAACAAACTTTTCCGAACCAAAGACGGATTGAGGAACCACGCATTAGTACATACATCAGAAAAGAAGTTTTCGTGTCCTATTTGTAATATGTCTTTTAAATATAAGAACAAtgtacacaaacacataaaaaatCATTCTGAGCCTAAGCGTTTTGTTTGCAACTACTGTGGGAGATCATTCAGTATGAAAGGTGGCTTGAAGAGTCACATAGACAGACAGCATTCTGAGAAATCAGGTTATTGTAATGTATGTTCAAAACATGTACCAAACTTAGAAGTTCATAGTTGGAAGCACACAGGGCAACGGCCATTAAAATGTGAACTGTGTTCAAGTAGCTTTTCACAGCTTAAAGCTTTGACACATCATGTTAACTTCAAACATAAGCAAACCTCAAAACACAAATGCCTTGTTGCCGGCTGTGAAATGGCATTTCCATCTAAACCAATGCTAGATTACCACACTGCCAAAGTACACAGTACAGACATTCCATTTCCTTGTGACCGATGCTCTAGGGGTTTCTACAGGAAGAATGACCTATCTCGGCATATGATTGGAACCCATAAGGAAAAGTTACTGTGA
Protein Sequence: MDKNICRLCCENRAETNIFESKQGEISVSSKIMYCCSGLQIKSDDGLPSKICEFCKKELDACYYFVLKCEAADKRLRLKIAEKPKFDATKTEIKLEADDDDNHWDEETFALRLCDVDIKSEFTEQKAEVRKKRRYTKRTKYKRHQDGSCKCPVCGRVCINPSTLTIHMRVHSSEKSFSCTVCNSKYKDAGNLKRHMNRKHDPMRQRQFVCENCGKAFYSKRDVEIHMRTHTGETPYTCNACGKSFTQATSLFRHRLRHESEKTYSCTICNKLFRTKDGLRNHALVHTSEKKFSCPICNMSFKYKNNVHKHIKNHSEPKRFVCNYCGRSFSMKGGLKSHIDRQHSEKSGYCNVCSKHVPNLEVHSWKHTGQRPLKCELCSSSFSQLKALTHHVNFKHKQTSKHKCLVAGCEMAFPSKPMLDYHTAKVHSTDIPFPCDRCSRGFYRKNDLSRHMIGTHKEKLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236835;
90% Identity: iTF_00236835;
80% Identity: iTF_00236310;