Basic Information

Insect: Bombus turneri
Gene Symbol: ECU06_1150
Assembly: GCA_014825825.1
Location: CM026104.1:5774173-5777721[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.7e-05 0.0015 19.0 2.5 1 21 270 290 270 291 0.95

2 9 0.01 0.9 10.2 0.3 1 23 338 361 338 361 0.92

3 9 0.095 8.6 7.1 4.8 1 23 393 415 393 415 0.97

4 9 2.4e-05 0.0021 18.5 1.6 1 23 421 444 421 444 0.96

5 9 9.7e-06 0.00088 19.7 0.3 1 23 450 472 450 472 0.98

6 9 6.9e-08 6.2e-06 26.5 1.0 1 23 478 500 478 500 0.98

7 9 1.1e-05 0.001 19.5 1.8 1 23 506 528 506 528 0.98

8 9 1.5e-05 0.0014 19.1 1.9 1 23 534 556 534 556 0.96

9 9 3.4e-05 0.0031 18.0 1.4 2 23 563 585 562 585 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.7e-05	0.0015	19.0	2.5	1	21	270	290	270	291	0.95
2	9	0.01	0.9	10.2	0.3	1	23	338	361	338	361	0.92
3	9	0.095	8.6	7.1	4.8	1	23	393	415	393	415	0.97
4	9	2.4e-05	0.0021	18.5	1.6	1	23	421	444	421	444	0.96
5	9	9.7e-06	0.00088	19.7	0.3	1	23	450	472	450	472	0.98
6	9	6.9e-08	6.2e-06	26.5	1.0	1	23	478	500	478	500	0.98
7	9	1.1e-05	0.001	19.5	1.8	1	23	506	528	506	528	0.98
8	9	1.5e-05	0.0014	19.1	1.9	1	23	534	556	534	556	0.96
9	9	3.4e-05	0.0031	18.0	1.4	2	23	563	585	562	585	0.96

Sequence Information

Coding Sequence: ATGGACTCTGAGGGTTCTGTTATATTGGAATCATGCGGAGAACATTCAATTTTAATTCAAACAGTAAAAGACATGGTTAATGTAAATACACATACTGAATTACAAAGTGAGGAAGGAGGATTTTTCGTAGTAACAGATGTTCAAGATGACCAACAAAATGTGATAGAAGTTTCAAATGAACAATCAACAGTAGGACAGTCTGATGTACAATTTTCCTGGTCTAATTTATGTAGAATATGTGCAAATGTCAATGATCATTTAATCCCAATATTTGAAGGAGAAGGTCTACAGCATGACTTATGTAATAAAATACACAAATATTTACCAATATGTGTATCTGAAAATGATGCACTTCCATTACAATTATGTTACCATTGTGCTGCTACATTATTAGCATGGCATGAACTATTAGAAGGATGTCTGAATGCAGAAAGAAGATTATTAGAGATGCAAGATGCTTTGCAAGAAAAACAGGATATAGAAGGATTAGAAATTTCTACACAAGAAGCAACATCTGCACCTAATGTAACAGAATCGCTTCATCAGCAGCAAGAAACTGTAAAGGATGAAGTCTCTGGGAATTCAGCTGTTAATGATTCAGACAGGTTTGGTCTACTTCAGAAGAAATCCTTCACGACATATTGCTCATGGCAGCAAGCATTCCATGAGACGAATTCTAAAGAAAGTATAAAAGAAAAAATTAATGATGATAGTGATCATTCATTTGAAAGTTATTACAATACAGATTTAAACATGGCAGAAATGGTGAAAGTAATGCTACCTTCTTTGAGAGAAATAAAAAATCAATATACGTGCAAATATTGTCGACGAATTTTTGAAAGAAAATACCACTTATCCCGGCATATACTCCAATGTAAAACTGGCAGTTTCACTGAACGCACTATATCAAATGCGAAAGATGTAGATGAAACAGAAGATAAAGATATGAAAAACGAGAATCAAAAAGATCTAAGATTATTTCAAAAATATAAAAAAAATAAAATTGAAACGTATCCATGCATATATTGCGATTATACAGTCAAACAAAAAAAATTGCTCGAACTACATTTGTTGGAATCGCATTCAGAGTTTACCAGAAAGAAGGACAAAAAATTAAAATGTGCCGATCGAGAAATGGTTATGCGCGCCAAAATGGAAATCGATGGGAAAGTTTATTATCATTGTAACGAATGTGGTAAAAATCTTTATTCGCCGTATACGTTTTTCTGTCATGTGCGTATACATACTGGAGAACGACCATATACTTGTCATCTTTGTGGCAAACAGTTTCGTATAAATCAAGGACTAGCGAGACATTTACGAGATACGCATGCAGGCATAAAAAATTTTCCATGTGACATATGCGGTCGAATGTTTTCGACAAAACGTAGCGCGGAAGATCATAAACGTATACATACTGGTGAACGACCATATATTTGTAATATTTGTGGAAAATCATTCAAGCAAAAAGCTTCACTATTTGTACATAATCGCACTCATTCAGATGTGTTTCCTTTTAAATGTAATTATTGCGATCAGAACTTTCGAACGAGACCATTACTCATGTTGCATGTAAAGAAACATACAGGTGAAAAGCCACACGCATGTGACATATGCGATCGACGGTTCCGTATAAAATACGAGCTAAAGCGTCATCGTTTAATTCACTTTGATGACAAACCGTGGCAATGCACAGAATGCAATCTCTCGTTCCGACAGAAACGCTATTTAGTTAATCATAAGAAAGTTAATCATAAGTTCGCGGTTCCTATGAAATAA
Protein Sequence: MDSEGSVILESCGEHSILIQTVKDMVNVNTHTELQSEEGGFFVVTDVQDDQQNVIEVSNEQSTVGQSDVQFSWSNLCRICANVNDHLIPIFEGEGLQHDLCNKIHKYLPICVSENDALPLQLCYHCAATLLAWHELLEGCLNAERRLLEMQDALQEKQDIEGLEISTQEATSAPNVTESLHQQQETVKDEVSGNSAVNDSDRFGLLQKKSFTTYCSWQQAFHETNSKESIKEKINDDSDHSFESYYNTDLNMAEMVKVMLPSLREIKNQYTCKYCRRIFERKYHLSRHILQCKTGSFTERTISNAKDVDETEDKDMKNENQKDLRLFQKYKKNKIETYPCIYCDYTVKQKKLLELHLLESHSEFTRKKDKKLKCADREMVMRAKMEIDGKVYYHCNECGKNLYSPYTFFCHVRIHTGERPYTCHLCGKQFRINQGLARHLRDTHAGIKNFPCDICGRMFSTKRSAEDHKRIHTGERPYICNICGKSFKQKASLFVHNRTHSDVFPFKCNYCDQNFRTRPLLMLHVKKHTGEKPHACDICDRRFRIKYELKRHRLIHFDDKPWQCTECNLSFRQKRYLVNHKKVNHKFAVPMK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215876; iTF_00226761; iTF_00227439; iTF_00229519; iTF_00219280; iTF_00220753; iTF_00215186; iTF_00217242; iTF_00219965; iTF_00232136; iTF_00222057; iTF_00214539; iTF_00232752; iTF_00230838; iTF_00221427; iTF_00225402; iTF_00226078; iTF_00230194; iTF_00233392;
90% Identity: iTF_00226078;
80% Identity: -