Basic Information

Insect: Bombus ignitus
Gene Symbol: -
Assembly: GCA_014825875.1
Location: CM026147.1:6098363-6101909[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.2e-05 0.0034 18.0 3.6 1 21 269 289 269 290 0.95

2 9 0.0098 1 10.2 0.3 1 23 337 360 337 360 0.92

3 9 0.00014 0.015 16.0 1.7 1 23 392 414 392 414 0.98

4 9 2.3e-05 0.0025 18.5 1.6 1 23 420 443 420 443 0.96

5 9 9.6e-06 0.001 19.7 0.3 1 23 449 471 449 471 0.98

6 9 6.7e-08 7.1e-06 26.5 1.0 1 23 477 499 477 499 0.98

7 9 1.1e-05 0.0012 19.5 1.8 1 23 505 527 505 527 0.98

8 9 1.5e-05 0.0016 19.1 1.9 1 23 533 555 533 555 0.96

9 9 3.4e-05 0.0036 18.0 1.4 2 23 562 584 561 584 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.2e-05	0.0034	18.0	3.6	1	21	269	289	269	290	0.95
2	9	0.0098	1	10.2	0.3	1	23	337	360	337	360	0.92
3	9	0.00014	0.015	16.0	1.7	1	23	392	414	392	414	0.98
4	9	2.3e-05	0.0025	18.5	1.6	1	23	420	443	420	443	0.96
5	9	9.6e-06	0.001	19.7	0.3	1	23	449	471	449	471	0.98
6	9	6.7e-08	7.1e-06	26.5	1.0	1	23	477	499	477	499	0.98
7	9	1.1e-05	0.0012	19.5	1.8	1	23	505	527	505	527	0.98
8	9	1.5e-05	0.0016	19.1	1.9	1	23	533	555	533	555	0.96
9	9	3.4e-05	0.0036	18.0	1.4	2	23	562	584	561	584	0.96

Sequence Information

Coding Sequence: ATGGATTCTGAAAGTTCTGTTATATTGGAATCATGCGGAGAACATTCAATTTTAATTCAAACAGTAAAAGACATGGTTAATGTAAATACACATACTGAAATACAAAGTGAGGAAGGAGGATTTTTTGTAGTAACAGATGTTCAAGATGAACAACAAAATGTGATAGAAGTTTCAAATGAGCAATCAACAGTAGGACAGTCTGATGTACAACTTTCCTGGTCTAATTTATGTAGAATATGTGCAAATGTCAATGATCATTTAATCCCAATATTTGAAGGAGAAGGTCTACAACATGACTTATGCAATAAAATACATAAATATTTACCAATATGTGTATCTGAAAATGATGCACTTCCATTACAATTATGTTACCATTGTGCTGCTACATTATTAGCATGGCATGAACTATTAGAAGGATGTCTGAATGCAGAAAGAAGATTATTAGAAATGCAAGATGCTTTGCAAGAAAAACAGGGTATAGAAGGATTAGAAACTTCTACACAGGATACAACGTCTGTACCTAATGTGACAGAATCACTTCATCAACAGCAAGAAACTGTAAAGGATGAAGTCTCTGGAAATTCAGCTGTTAATGATTCAGACAGGTTTGGTCTACTTCAGAAGAAATCCTTCACGACATATTGCTCATGGCAGCAAGCGAATGAGATGAATTCTAAAGAAAGTATAAAAGAAAAAATTAATGATGACAGTGATCATTCATTTGAAAGTTATTACAATACAGATTTAAACATGACAGAAATGGTGAAAGTAATGCTACCTTCTTTGAGAGAAATAAAAAATCAATATACGTGCAAACACTGTCGACGAATTTTTGAAAGAAAATACCACTTATCCCGACATATACTGCAATGTAAAACTGGCAGCTTCACTGAACGCACTATATCAAATGCGAAAGATGTAGATGAAACAGAAGATAAAGATATGAAAAACGAAAATCGAAAAGATCTAAGATTGTTCCAAAAATATAAAAAAAATAAAGTTGAAACGTATCCATGCATATATTGCGATTATACAGTCAAACAAAAAAAATTGCTCGAACTACATTTGTTAGAATCGCATTCAGAGTTTACCAGAAAGAAGGACAAAAAATTAAAATGTGCCGATCGAGAAATGGTTATGCGCGCCAAAATGGAAATCGATGGGAAAGTTTATTATCATTGTAACGAATGTGGTAAAAATCTTTATTCGCCGTATACGTTCTTCTGGCATGTGCGTATACATACTGGAGAACGAGCATATACTTGTCATCTTTGTGGCAAACAGTTTCGTATAAATCAAGGACTAGCGAGACATTTACGAGATACGCATGCAGGCATAAAAAATTTTCCATGTGACATATGCGGTCGAATGTTTTCGACAAAACGTAGCGCGGAAGATCATAAACGTATTCATACTGGTGAACGACCATATATTTGTAATATTTGTGGAAAATCATTCAAACAAAAGGCTTCTCTATTTGTACATAATCGCACTCATTCAGATGTGTTTCCTTTTAAATGTAATTACTGCGATCAGAACTTTCGAACGAGACCATTACTCATGTTGCATGTAAAGAAACATACAGGTGAAAAGCCACACGCATGCGACATATGCGATCGACGGTTCCGTATAAAATACGAGCTAAAGCGCCATCGTTTAATTCACTTTGATGATAAACCGTGGCAATGCACAGAATGCAATCTCTCGTTCCGACAGAAACGCTATTTAGTTAATCATAAGAAAGTTAATCATAAGTTTGCGGTTCCTATGAAATAA
Protein Sequence: MDSESSVILESCGEHSILIQTVKDMVNVNTHTEIQSEEGGFFVVTDVQDEQQNVIEVSNEQSTVGQSDVQLSWSNLCRICANVNDHLIPIFEGEGLQHDLCNKIHKYLPICVSENDALPLQLCYHCAATLLAWHELLEGCLNAERRLLEMQDALQEKQGIEGLETSTQDTTSVPNVTESLHQQQETVKDEVSGNSAVNDSDRFGLLQKKSFTTYCSWQQANEMNSKESIKEKINDDSDHSFESYYNTDLNMTEMVKVMLPSLREIKNQYTCKHCRRIFERKYHLSRHILQCKTGSFTERTISNAKDVDETEDKDMKNENRKDLRLFQKYKKNKVETYPCIYCDYTVKQKKLLELHLLESHSEFTRKKDKKLKCADREMVMRAKMEIDGKVYYHCNECGKNLYSPYTFFWHVRIHTGERAYTCHLCGKQFRINQGLARHLRDTHAGIKNFPCDICGRMFSTKRSAEDHKRIHTGERPYICNICGKSFKQKASLFVHNRTHSDVFPFKCNYCDQNFRTRPLLMLHVKKHTGEKPHACDICDRRFRIKYELKRHRLIHFDDKPWQCTECNLSFRQKRYLVNHKKVNHKFAVPMK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00231491;
90% Identity: iTF_00226078;
80% Identity: -