Basic Information

Insect: Bombus impatiens
Gene Symbol: ECU06_1150
Assembly: GCA_000188095.4
Location: NT:13044-17411[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.5e-05 0.0015 18.0 3.6 1 21 269 289 269 290 0.95

2 9 0.016 1 9.2 0.1 1 23 337 360 337 360 0.92

3 9 0.00011 0.0069 16.0 1.7 1 23 392 414 392 414 0.98

4 9 1.8e-05 0.0011 18.5 1.6 1 23 420 443 420 443 0.96

5 9 7.4e-06 0.00046 19.7 0.3 1 23 449 471 449 471 0.98

6 9 5.2e-08 3.2e-06 26.5 1.0 1 23 477 499 477 499 0.98

7 9 8.4e-06 0.00052 19.5 1.8 1 23 505 527 505 527 0.98

8 9 1.2e-05 0.00072 19.1 1.9 1 23 533 555 533 555 0.96

9 9 2.6e-05 0.0016 18.0 1.4 2 23 562 584 561 584 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.5e-05	0.0015	18.0	3.6	1	21	269	289	269	290	0.95
2	9	0.016	1	9.2	0.1	1	23	337	360	337	360	0.92
3	9	0.00011	0.0069	16.0	1.7	1	23	392	414	392	414	0.98
4	9	1.8e-05	0.0011	18.5	1.6	1	23	420	443	420	443	0.96
5	9	7.4e-06	0.00046	19.7	0.3	1	23	449	471	449	471	0.98
6	9	5.2e-08	3.2e-06	26.5	1.0	1	23	477	499	477	499	0.98
7	9	8.4e-06	0.00052	19.5	1.8	1	23	505	527	505	527	0.98
8	9	1.2e-05	0.00072	19.1	1.9	1	23	533	555	533	555	0.96
9	9	2.6e-05	0.0016	18.0	1.4	2	23	562	584	561	584	0.96

Sequence Information

Coding Sequence: ATGGACTCTGAGGGTTCTGTTATATTGGAATCATGCGGAGaacattcaattttaattcaaacggTAAAAGACATGGTTAATGTAAATACACATACTGATTTACAAAGTGAGGAAGGTGGATTTTTCGTAGTAACAGATGTTCAAGATGAACAACAAAATGTGATAGAAGTTTCAAATGAGCAATCAACAGTAGGACAGTCTGATGTACAATTTTCCTGGTCTAATTTATGTAGAATATGTGCAAATGTCAATGATCATTTAATCCCAATATTTGAAGGAGAAGGTCTACAACATGACttatgcaataaaatacataaatatttaccaatatgtgtATCTGAAAATGATGCACTCCCATTACAATTATGTTACCATTGTGCTGCTACATTATTAGCATGGCATGAACTATTAGAAGGATGTCTGAATGCAGAAAGAAGATTATTAGAGATGCAAGATGCTTTGCAAGAAAAACAGGGTATAGAAGGATTAGAAACTTCTACACAGGATGCAACATCTGCACCTAATGTAACGGAATCACTTcATCAACAGCAAGAAACTGTAAAGGATGAAGTCTCTGGGAATTCAGCTGTTAATGATTCAGACAGgTTTGGTCTACTTCAGAAGAAATCCTTCACAACATATTGCTCATGGCAGCAAGCGAATGAGGCGAATtctaaagaaagaataaaagaaaaaattaatgacgATAGTGATCATTCATTTGAAAGTTATTACAATACAGATTTAAACATGGCAGAAATGGTGAAAGTAATGCTACCTTCTttgagagaaataaaaaatcaatatacgTGCAAACACTGTCGACGAatctttgaaagaaaataccaCTTATCCCGACATATACTCCAATGTAAAACTGGCAGCTTCACTGAACGTACTATATCAAATGCGAAAGATGTAGATGAAACAGAAgataaagatatgaaaaacGAAAATCGAAAAGATGTAAgattgtttcaaaaatataaaaaaaataaagttgaaaCGTATCCATGTATATATTGTGATTATGCagtcaaacaaaaaaaattgctCGAACTACATTTGTTGGAATCGCATTCAGAGTTTACCAGAAAGAAggacaaaaaattaaaatgtgcCGATCGAGAAATGGTTGTGCGTGCTAAAATGGAAATCGATGGGAAAGTTTATTATCATTGCAACGAATGTGGTAAAAATCTTTATTCACCTTATACGTTCTTCTGGCATGTGCGTATACATACTGGAGAACGACCATATACTTGTCATCTTTGTGGCAAACAGTTTCGTATAAATCAAGGACTAGCGAGACATTTACGAGATACGCATGCAGgcataaaaaattttccatgtGACATATGCGGTCGAATGTTTTCGACAAAACGTAGCGCGGAAGATCATAAACGTATTCATACTGGTGAACGAccatatatttgtaatatttgtggAAAATCATTCAAGCAAAAGGCTTCTCTATTTGTACATAATCGCACTCATTCAGATGTGTTTCCTTTTAAATGCAATTATTGCGATCAGAACTTTCGAACGAGACCATTACTCATGTTGCATGTAAAGAAACATACAGGTGAAAAGCCACACGCATGCGATATATGTGATCGACGGTTCCGTATAAAATACGAGCTAAAGCGTCATCGTTTAATTCACTTTGATGATAAACCGTGGCAATGCACAGAATGCAATCTCTCGTTCCGACAGAAACGCTATTTAGTTAATCATAAGAAAGTTAATCATAAGTTTGCGGTTCCTAtgaaataa
Protein Sequence: MDSEGSVILESCGEHSILIQTVKDMVNVNTHTDLQSEEGGFFVVTDVQDEQQNVIEVSNEQSTVGQSDVQFSWSNLCRICANVNDHLIPIFEGEGLQHDLCNKIHKYLPICVSENDALPLQLCYHCAATLLAWHELLEGCLNAERRLLEMQDALQEKQGIEGLETSTQDATSAPNVTESLHQQQETVKDEVSGNSAVNDSDRFGLLQKKSFTTYCSWQQANEANSKERIKEKINDDSDHSFESYYNTDLNMAEMVKVMLPSLREIKNQYTCKHCRRIFERKYHLSRHILQCKTGSFTERTISNAKDVDETEDKDMKNENRKDVRLFQKYKKNKVETYPCIYCDYAVKQKKLLELHLLESHSEFTRKKDKKLKCADREMVVRAKMEIDGKVYYHCNECGKNLYSPYTFFWHVRIHTGERPYTCHLCGKQFRINQGLARHLRDTHAGIKNFPCDICGRMFSTKRSAEDHKRIHTGERPYICNICGKSFKQKASLFVHNRTHSDVFPFKCNYCDQNFRTRPLLMLHVKKHTGEKPHACDICDRRFRIKYELKRHRLIHFDDKPWQCTECNLSFRQKRYLVNHKKVNHKFAVPMK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00231491;
90% Identity: iTF_00226078;
80% Identity: -