Basic Information

Insect: Bombus turneri
Gene Symbol: MBD-R2
Assembly: GCA_014825825.1
Location: CM026109.1:5680238-5690749[-]

Transcription Factor Domain

TF Family: MBD
Domain: MBD domain
PFAM: PF01429
TF Group: Unclassified Structure
Description: The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 1.1 5.4e+03 -2.8 0.0 44 68 435 459 433 461 0.92

2 2 3.4e-17 1.6e-13 50.1 0.3 6 69 542 605 537 613 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	1.1	5.4e+03	-2.8	0.0	44	68	435	459	433	461	0.92
2	2	3.4e-17	1.6e-13	50.1	0.3	6	69	542	605	537	613	0.90

Sequence Information

Coding Sequence: ATGAAGCGACGACGTGTAGCGTCGCATATTAAAAAGATATCGCTTGTGAGAACAATGAGAATGGCGCGCAAATGTTGCGTGCGTAGCTGTGAGGCTGATGTGCAAGATGCACGTACTAAAGGGTTACCGCTTCATAAATTTCCAAAAGATATTAATTTAAGGAACAAATGGTTGACTAGTGGTGGATTCGAAGCGAGCTTTAAACCTTCACCAGGTCAGGTTGTTTGTCATAGACACTTCAAACGAGCCGACTACGAAGCTGCTAAAGGACATAAATTACTTCTACGTAAGGGCAGCGTTCCGTCGGTTTTTGAGGACTATGACAATCATCCAGATCCTGTAATTATGTCTGTAAAATCATCAACTTCTTATGCACAGGAAGATTTAGATCTTATTAATTCTGAAATTCTGAACTTAGAACAATCTACCTTTTCATTGAATTCTGGACTCAGAGCATTAAAGTCTAATAATTGTGGAGAAACATGTTCTTCTCGACCAGAACCATCAGTTAATTCCTTCAATTTACTAGATTCAACAGAATTACTTGATAATGGATGTAAGAACTTTAATGTGAAAGAAGAAAATGTATATACTGTGAAACAAGAGATAAATAAAAATTCAGAAATAGAAGTGAATACTATGGCAGTGCAATTAGGCATTGTTGAATCTGATATAGCAATAAAACATATACAAAAAGATTTGGCCATTAAGGAAGAACTGAAAAGTATGGAAGTGGAAGATGAAAAAACATTTGATAAACCAGAAGAATTAAAACCAAAAATTTTTAATCGTGGTGGACTAAAATTTTTTCCTGGTGCCAAATTGGAAGCGAAAGATTTCAATGAAAAATGGTATTCAGCGAAAGTAGTTGAAACTGATTGGGATGAACGAGAAGTATTGATACGTTTTGACAAGTGGAGTTCAAGGTTTGATGAATGGATACCTATGGATAGTTCAAGATTACGTGTATTGCAAACACAATCAAACGAACAAACCTGGAATCTACCATCTCAGGAAACAAAAATGAAAGACTTTTCAATGGGAGAAAGGATACTTGCTACGTGGGCTGATGGTAGAAAATATCCAGCTAAAGTAAATGCCGTCTTAGGAAACGATAGATATGATGTACTGTTTGATGATGGATATACAAAGACAATTAAATCGTCAAAAATGACAAAAATTGCTACAACAGTCACAAAGCAACCTAGTCAAACTGAAGAATATATAGGAAGCAAGCAAGAAAGAAGAGATAAGAAAAGAAAGCATACAGTGATGGAGTTATTTCATACACATTATAGAAAACGTTCAAAAAATGAAACAGATAAATTAATAAAAAAGGAAGGAATTATAGTTAATGAAAATGTAGAATGCTTTTCGGAAAATAAAATTGATTTAGATGGAACTTTATTTGGGCCCTGCTATGATCCAGGGACAGATTTATTACGTGGGTTTGACACCAATGTATCTAAAATGAAAGCTTATCCTAAAAAAAGTAAAAAGGAAGTATCTAAGAATGAAATAGATCAAGTAGAAGATGTGGGTCCTGAATGGATTGATGGAGAACCTCAGGGAACTGAATCTTATATAGTGGATGGAAATGATGGACCACGTCGATCAATAATAGTTGCAGACAGAAGATTACCACCTGGATGGCAAAAACATTTTACTCAAAGAAAAGCTGGTACATCAGCTGGAAAGTGGGATGTCTTATTTCTTCATAAATCAAGTGGGAAAAAATTTAGATCAAAAAATGATATTAGGACATTTATGGAAAATCAGGGGCAATTCGACTTTGATCCAGAAAAATTTGATTTTTGCATTCATCGAAAAAAGAAAAATCAAAGTCAAAAAGTAAAACAAGATATCGTTGTGGATACTCCAAAAAAGATTAAGACTTTATTGCCTAAAACAAAGGCAACACCAGTAACTGAGAATTCTTTACCTGTTCCCCCAAGTACACCAGTTACAACATTATTATCTACATCAAGTACATCTATTAAAGATGGTGCTGTTTTTATTGGTGGACTTCGAGTAGAAATGGAGGACAGTGCTTATAAATGTCCGAAACAAGGGTGTAGTAAAACATTTAGGAAGGAAAATCTTCTACAAATGCATATAAAACATTATCATCCAGAATATTCGAAATTTTTGGGATCTACACCAAATGTTGCAGATTTAGCTTATGCAAGAACAATTGGGGAATCTGTTGAAGATATTATTCCAAAAAAGTCAAATAATTTGTTAGAAAAGTGCAATAAATTTGGAAAGAGAAAATTTATTCAAGATAAATCATTGTATGTTTCATCATCTTCTGTAACAAGCACTCTTCAACCTATATCGCCAACAGCAATTGTACCAACAACAGTAGAAACAGAGGATGAAGTAGACCAAATGGAAAAATCCAATGATGTGCAAACAGACGATATTAAAATGGATAGAATGTCTCCAAGTTCTAGTCATAGTTTAGATATGGATGACGAAGTAGAACAAAAACAGGAAGATACATGTGCAATGTCACCAGGAACACTATTTGATATGAAAATTAGGGAAGAAAAAACACAAAGTGGCATTAAGACACTTCTTCCGGTAAGACCAGCCATGTCTTCAGAAGCACAACGAATTGATAGATCAAAGTCTTTAGATGAAGCTATTCATATCGACAAAATTAAAGGTCAAAGGAAACGACAATTATCAGAATATAGTTCTGATGCATTAAACAGAAGTAAAAGGCGACATGAATTTCCGGACGAGTATGGTGATTTAGATGATAGTACTATGGATATAGAAGGAGGAGGACCGACTACACCCACGTATAGATATAGTCGCAGAAAATCAGATTCAAGAAGTGATGAAAATAGCCAAAGTAGTCAACTAACCGATTCGCGTGTTGAGAAAGATGATCCCTTGAAAGGGAATATTGGTAAAAAAGATACTAATGATGGGGAAGAGAATGAAGGAGTTATGATGATGATCAATGGTGAAATGGTGAAAGTGGAGCAGCTTCGTAGAGAAGAAATAATAAATTGCACTTGTGGATTTATGGAAGAAGATGGTTTAATGATTCAATGCGACCTTTGTTTGTGTTGGCAACATGGTCACTGCAATGCAATAGAAAAGGAAAAGGATGTACCTGAGAAATATGTTTGTTTTATTTGTCGGAATCCATATCGGCAACGATTATCCAAAAAATATTTTCACGATCAAGATTGGATAAAAGAGGGAAAGCTACCAACATTATCTAGCCGAACAAAAAATCAGCATCGAGTTAATCAAAGAACAGCTATGTTAAAACGTTCTTATGATCTAGTTGCTGCTCTTTTACACATTCAGCAAGTTTTACATAGTTTAAGAGTAAAAATCAATGTAGCTCAAAAGAAAGATCATCCAAAGCTATATCTGTGGGCCAAAAATTGGGAAAAAGTTGAAGTACCAAAACCAAATGTCACGCCAGTACCAATCATGGAGATTATGAAAGTAGGAAAAGAGTGTACAGATATTCCAAATGAAAGTTTTCATCGAACTGAAGTAAAAACGGAAACAAAGTTCAGTTTAAGAGATGATCATGATGAAAAGTCGATAGCCTCAGATTCAGAATTAATGAAGATATTAGAAGAAGATAATATAACTCCAGATGAATCTAAAATTAACGGCAAAAAGGAAGATATACATCAAACTAAAAGTCATATTCTTCTCGATGCACTTACGAAAAACGATACTTCAGAAGGAAAATATACAAATTCATTACCTTCAGAGGTGAAAACAGATACAGATTTGTTAACCAATCAATCAGATATATACGAGAATAACGTATCTCCGACAACTATATCAGCGAATCACATGCATGAAGAACTAAATGAACATGAAATGTCAGCACCGTTGCAACCTTTCATACCACAACCAGAAGCGCCAATTGACCCAGGAGAATGTCGAATGCGATTATTAGAACACATAGAACATTTTCAACATCATATAGATGCAAAATTAACATTCATCGAGGCAGAAGTTTGTGATACATCTACCTTAGATGTTCAGCCTCGCACTAAACAAACGATTCAAATGCTTGTTCGAGATTTAAACACTGTGCGAAAATTAGCTGCTTTGTGTTGA
Protein Sequence: MKRRRVASHIKKISLVRTMRMARKCCVRSCEADVQDARTKGLPLHKFPKDINLRNKWLTSGGFEASFKPSPGQVVCHRHFKRADYEAAKGHKLLLRKGSVPSVFEDYDNHPDPVIMSVKSSTSYAQEDLDLINSEILNLEQSTFSLNSGLRALKSNNCGETCSSRPEPSVNSFNLLDSTELLDNGCKNFNVKEENVYTVKQEINKNSEIEVNTMAVQLGIVESDIAIKHIQKDLAIKEELKSMEVEDEKTFDKPEELKPKIFNRGGLKFFPGAKLEAKDFNEKWYSAKVVETDWDEREVLIRFDKWSSRFDEWIPMDSSRLRVLQTQSNEQTWNLPSQETKMKDFSMGERILATWADGRKYPAKVNAVLGNDRYDVLFDDGYTKTIKSSKMTKIATTVTKQPSQTEEYIGSKQERRDKKRKHTVMELFHTHYRKRSKNETDKLIKKEGIIVNENVECFSENKIDLDGTLFGPCYDPGTDLLRGFDTNVSKMKAYPKKSKKEVSKNEIDQVEDVGPEWIDGEPQGTESYIVDGNDGPRRSIIVADRRLPPGWQKHFTQRKAGTSAGKWDVLFLHKSSGKKFRSKNDIRTFMENQGQFDFDPEKFDFCIHRKKKNQSQKVKQDIVVDTPKKIKTLLPKTKATPVTENSLPVPPSTPVTTLLSTSSTSIKDGAVFIGGLRVEMEDSAYKCPKQGCSKTFRKENLLQMHIKHYHPEYSKFLGSTPNVADLAYARTIGESVEDIIPKKSNNLLEKCNKFGKRKFIQDKSLYVSSSSVTSTLQPISPTAIVPTTVETEDEVDQMEKSNDVQTDDIKMDRMSPSSSHSLDMDDEVEQKQEDTCAMSPGTLFDMKIREEKTQSGIKTLLPVRPAMSSEAQRIDRSKSLDEAIHIDKIKGQRKRQLSEYSSDALNRSKRRHEFPDEYGDLDDSTMDIEGGGPTTPTYRYSRRKSDSRSDENSQSSQLTDSRVEKDDPLKGNIGKKDTNDGEENEGVMMMINGEMVKVEQLRREEIINCTCGFMEEDGLMIQCDLCLCWQHGHCNAIEKEKDVPEKYVCFICRNPYRQRLSKKYFHDQDWIKEGKLPTLSSRTKNQHRVNQRTAMLKRSYDLVAALLHIQQVLHSLRVKINVAQKKDHPKLYLWAKNWEKVEVPKPNVTPVPIMEIMKVGKECTDIPNESFHRTEVKTETKFSLRDDHDEKSIASDSELMKILEEDNITPDESKINGKKEDIHQTKSHILLDALTKNDTSEGKYTNSLPSEVKTDTDLLTNQSDIYENNVSPTTISANHMHEELNEHEMSAPLQPFIPQPEAPIDPGECRMRLLEHIEHFQHHIDAKLTFIEAEVCDTSTLDVQPRTKQTIQMLVRDLNTVRKLAALC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01539602;
90% Identity: iTF_00216442;
80% Identity: iTF_00231361;