Bter003736.1
Basic Information
- Insect
- Bombus terrestris
- Gene Symbol
- -
- Assembly
- GCA_000214255.1
- Location
- NC:4148898-4154925[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0017 0.11 12.2 3.4 2 23 104 125 103 125 0.97 2 17 2.4e-05 0.0015 18.1 1.9 1 23 127 150 127 150 0.96 3 17 0.0016 0.097 12.3 0.9 1 23 155 178 155 178 0.96 4 17 0.00018 0.011 15.3 2.2 1 23 184 207 184 207 0.95 5 17 0.00067 0.041 13.5 2.0 2 23 214 236 213 236 0.95 6 17 0.0044 0.27 11.0 0.3 1 23 241 263 241 263 0.96 7 17 0.00039 0.024 14.3 0.5 3 23 271 290 270 290 0.98 8 17 3.5e-06 0.00021 20.7 0.1 1 23 296 318 296 318 0.97 9 17 3.2e-06 0.00019 20.8 1.4 2 23 408 429 407 429 0.96 10 17 0.0094 0.57 9.9 2.9 1 23 431 454 431 454 0.90 11 17 0.0085 0.52 10.0 0.9 1 23 459 482 459 482 0.95 12 17 0.0017 0.11 12.2 0.3 1 23 488 511 488 511 0.94 13 17 0.0021 0.13 12.0 2.2 3 23 519 540 517 540 0.95 14 17 0.00027 0.016 14.8 3.2 1 23 545 567 545 567 0.97 15 17 1.1e-05 0.00065 19.2 0.3 2 23 574 595 573 595 0.97 16 17 8.6e-06 0.00052 19.5 0.1 1 23 601 623 601 623 0.98 17 17 0.00041 0.025 14.2 1.5 1 23 629 651 629 651 0.98
Sequence Information
- Coding Sequence
- ATGCTCCGTTTCACTCTATATGTAAATGCAGTAACGTCCCTGCCCTCGCCGACCAGGTTGCTAGTAATTGTTCAAGGGACAAACGTAAAATCCGTGAGAGAAAGGAAGCTCGCGCGAATTTTGGATCCTTTGAGCGAAGAATTCAAGACCGACTCGCAGGCTCACTTACCGTTAGAGCTCCCCGAGGTATACGAGAATTGGATCGACAAAGAAAACTTCGAGATCATGTCCGCTAGCCAAGAGGAAACCGCAATATCTCTTCAAAACAATCCCGGCCAACGATCCAAAAAGAAAACCTTGACTCGTCTAGAATGCGACCACTGTCGACGAAAGTTCTTGAAGAAGAGTAACTTGGCGGAGCATTTGAAGAAACACAAACACAAGTGTTCTGACTGTCCGAAGACTTTTAGACTTCGTCGATACCTAGCTTCTCACATAGAGAAGATCCATCGACGTCAAGTGTACGATTGCAGTGTTTGCGAATACAAAAGCAATAACAAGGGAACACTGAAGAATCACTACATTCGTCTACACACGACTAATTACAATTTCGCTTGCGACACTTGTGGCAAACAATTCAAGATAAAGAAAGCATTGAACCATCACGTGAAACAAAATCATAGCGACGCGCCACCAATAGTGTGCGACGTTTGTGGCCACTTCAGCAAGAATCTTCATGCTCTCAAGGCTCATATGAAGTACAGACACTATAAGCCTGAGTTTATCTGCAGAATCTGCAGAAGGGGGATGACGACTCAAGAGAATTTGGAGCAACACTTAACCTGGCACGAGACCAGGGAAAAGGTGCTCTGCCCCACGTGTGGAAAGAGATTTCGAGGTCGGGATTTGGACTCTCATATGCGAGTGCATACAGGAGTCAAGCCTTTTCCTTGTCCTGTTTGTGGAAAGACATTCAGAAGGCAGACTGCCCAAGAGCAGCATGTTCTCATTCATACAGGAAAGAGACCTTCTCCTGCACTGGACCCTCTTAATGGTAGCGACACGAATCCTCTGGAAGAACCTTGTTTcatcaaaatagaaaactCATACTCTTTGGCAAAAACGGAACGAAGGCGACAAAGGGAAAGGATCAGAAAAATGAACTTAAAAATTCGCACTATAACATCCGTAGATTGTACAacgaaaaagttgaaaatcgAACCAAGTCGAAGCAACAAAATTGAAGCAACAATCTCGAAAAAGCAAACTGAACCTCTATTGGAGTGTGACTTCTGTGGCAAACAGTTCAACCGGAAGTCGTTTCTAGCGTCGCACATGAAGCAACACAGACATCGCTGTAAAACTTGCAACCAAACATTCGGGCTAAGAAAAGACTTGAAACAGCACTCGGAGCAAGTTCATGGTCCTGTACTATATCCGTGCAGTATCTGTGAATATAAAAGCAACAACAGGTGGACACTGAAGGATCATTTCATTCGAAAGCACACCAGCAGGTTCGACTATTCGTGTGCAGTCTGTGGAAAACAATTCAAGATCAAGAACGACATGGTGCAGCACGCGAAGCAAATGCATAGCAACGCATCTCCAATTATTTGCACAGTTTGCGGTCACGCATGCAAGAGCGTGCCTTCCTTAAAGTCTCACATGAAATACAAGCACTACAAGACTGCGTACCAGTGTAATTTGTGCAAACGTTGTATGACGACGCAGAAGAACCTGGAGCAACATCTGTTGTGGCACAAGAGGAAGGAGAAAGTGGTTTGCCAAACTTGTGGCAAGACTTTTGGTCAAAAGAGGGATCTGGACCTTCATTTGAGGATTCACGAAGGTATCAGGCCGTTCTCTTGCCCGGTTTGTGGCAAGAAGTTCCCGAGAAGAACTGCTCAGGAGCAACATATTTTGATACACACGGGTCAAAGACCGTATACTTGTGATATTTGTGGACAGAAGTTTGCGCAAAAACCGGGACTGATCTGTCACAGGAAGCGACATCCTGGACCTCTGCCACAGCTCCCTGTGATCTCCGTTAGAAAGATCATCGCGGATTTTACTCAGGGACTGAACGATGCCGCAATGGAGAAGAAGAATTAG
- Protein Sequence
- MLRFTLYVNAVTSLPSPTRLLVIVQGTNVKSVRERKLARILDPLSEEFKTDSQAHLPLELPEVYENWIDKENFEIMSASQEETAISLQNNPGQRSKKKTLTRLECDHCRRKFLKKSNLAEHLKKHKHKCSDCPKTFRLRRYLASHIEKIHRRQVYDCSVCEYKSNNKGTLKNHYIRLHTTNYNFACDTCGKQFKIKKALNHHVKQNHSDAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFICRICRRGMTTQENLEQHLTWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKTFRRQTAQEQHVLIHTGKRPSPALDPLNGSDTNPLEEPCFIKIENSYSLAKTERRRQRERIRKMNLKIRTITSVDCTTKKLKIEPSRSNKIEATISKKQTEPLLECDFCGKQFNRKSFLASHMKQHRHRCKTCNQTFGLRKDLKQHSEQVHGPVLYPCSICEYKSNNRWTLKDHFIRKHTSRFDYSCAVCGKQFKIKNDMVQHAKQMHSNASPIICTVCGHACKSVPSLKSHMKYKHYKTAYQCNLCKRCMTTQKNLEQHLLWHKRKEKVVCQTCGKTFGQKRDLDLHLRIHEGIRPFSCPVCGKKFPRRTAQEQHILIHTGQRPYTCDICGQKFAQKPGLICHRKRHPGPLPQLPVISVRKIIADFTQGLNDAAMEKKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215851; iTF_00228817; iTF_00227415; iTF_00221401; iTF_00224697; iTF_00215164;
- 90% Identity
- iTF_00215851; iTF_00228817; iTF_00227415; iTF_00221401; iTF_00224697; iTF_00215164;
- 80% Identity
- -