Basic Information

Insect: Bombus ignitus
Gene Symbol: -
Assembly: GCA_014825875.1
Location: CM026146.1:4905983-4909349[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0021 0.22 12.3 3.4 2 23 29 50 28 50 0.97

2 18 2.9e-05 0.0031 18.2 1.9 1 23 52 75 52 75 0.96

3 18 0.002 0.21 12.4 0.9 1 23 80 103 80 103 0.96

4 18 0.00022 0.023 15.4 2.2 1 23 109 132 109 132 0.95

5 18 0.00082 0.087 13.6 2.0 2 23 139 161 138 161 0.95

6 18 0.0054 0.57 11.0 0.3 1 23 166 188 166 188 0.96

7 18 0.00048 0.051 14.3 0.5 3 23 196 215 195 215 0.98

8 18 4.3e-06 0.00046 20.8 0.1 1 23 221 243 221 243 0.97

9 18 0.00037 0.039 14.7 0.4 1 23 249 271 249 271 0.97

10 18 3.9e-06 0.00041 20.9 1.4 2 23 374 395 373 395 0.96

11 18 0.011 1.2 10.0 2.9 1 23 397 420 397 420 0.90

12 18 0.01 1.1 10.1 0.9 1 23 425 448 425 448 0.95

13 18 0.0021 0.23 12.3 0.3 1 23 454 477 454 477 0.94

14 18 0.0025 0.27 12.1 2.2 3 23 485 506 483 506 0.95

15 18 0.00033 0.035 14.9 3.2 1 23 511 533 511 533 0.97

16 18 1.3e-05 0.0014 19.3 0.3 2 23 540 561 539 561 0.97

17 18 1.1e-05 0.0011 19.6 0.1 1 23 567 589 567 589 0.98

18 18 0.0005 0.053 14.3 1.5 1 23 595 617 595 617 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0021	0.22	12.3	3.4	2	23	29	50	28	50	0.97
2	18	2.9e-05	0.0031	18.2	1.9	1	23	52	75	52	75	0.96
3	18	0.002	0.21	12.4	0.9	1	23	80	103	80	103	0.96
4	18	0.00022	0.023	15.4	2.2	1	23	109	132	109	132	0.95
5	18	0.00082	0.087	13.6	2.0	2	23	139	161	138	161	0.95
6	18	0.0054	0.57	11.0	0.3	1	23	166	188	166	188	0.96
7	18	0.00048	0.051	14.3	0.5	3	23	196	215	195	215	0.98
8	18	4.3e-06	0.00046	20.8	0.1	1	23	221	243	221	243	0.97
9	18	0.00037	0.039	14.7	0.4	1	23	249	271	249	271	0.97
10	18	3.9e-06	0.00041	20.9	1.4	2	23	374	395	373	395	0.96
11	18	0.011	1.2	10.0	2.9	1	23	397	420	397	420	0.90
12	18	0.01	1.1	10.1	0.9	1	23	425	448	425	448	0.95
13	18	0.0021	0.23	12.3	0.3	1	23	454	477	454	477	0.94
14	18	0.0025	0.27	12.1	2.2	3	23	485	506	483	506	0.95
15	18	0.00033	0.035	14.9	3.2	1	23	511	533	511	533	0.97
16	18	1.3e-05	0.0014	19.3	0.3	2	23	540	561	539	561	0.97
17	18	1.1e-05	0.0011	19.6	0.1	1	23	567	589	567	589	0.98
18	18	0.0005	0.053	14.3	1.5	1	23	595	617	595	617	0.98

Sequence Information

Coding Sequence: ATGTCCGCTAGCCAAGAGGAAACCGCAATATCTCTTCAAAACAATCCCGGCCAACGATCCAAAAAGAAAACCTTGACTCGTCTAGAATGCGACCACTGTCGACGAAAGTTCTTGAAGAAGAGTAACTTGGCGGAGCATTTGAAGAAACACAGACACAAATGTTCTGACTGTCCGAAGACTTTCAGACTTCGCCGATACCTAGCTTCTCACATAGAGAAGATCCATCGACGTCAAGTGTACGATTGCAGTGTTTGCGAATACAAAAGCAATAACAAGGGAACACTGAAGAATCACTACATTCGTCTACACACGACTAATTACAATTTCGCTTGCGACACTTGTGGCAAACAATTCAAGATAAAGAAAGCATTGAACCATCACGTGAAACAAAATCATAGCGACGCACCACCAATAGTGTGCGACGTTTGTGGCCACTTCAGCAAGAATCTTCATGCTCTCAAGGCTCATATGAAGTACAGACACTATAAGCCTGAGTTTATTTGCAGAATCTGCAGAAGGGGGATGACGACTCAAGAGAATTTGGAGCAACACTTAACCTGGCACGAGACCAGGGAAAAGGTGCTCTGCCCCACGTGTGGAAAGAGATTTCGAGGTCGGGATTTGGACTCTCATATGCGAGTGCATACAGGAGTCAAGCCTTTTCCTTGTCCTGTTTGTGGAAAGACATTCAGAAGGCAGACTGCCCAAGAGCAGCATGTTCTCATTCATACAGGAAAGAGACCGTATGTTTGCGATATTTGTGGGCAGGCGTTTGCTCAGAAACCTGGGCTGATTTGCCATAGGAAGCGCCATCCTGGACCTCTGCCTCCATTGCCTGTCGTATCCATCAAGAATATTGTCACGGATTCTCCTGCACTGGACCCTCTTAATGGTAGCGACACGAATCCTCTGGAAGAACCTTGTTTCATCAAAATAGAAAACTCGTACTCTTTGGCAAAAACGGAACGAAGGCGACAAAGGGAAAGGATCAGAAAAATGAACTTAAAAATTCGCACTATAACATCCGTAGATTGTACAACGAAAAAGTTCAAAATCGAACCAAGTCGAAGCAACAAAATTGAAGCAACAATCTCAAAAAAGCAAACTGAACCTCTATTGGAGTGTGACTTCTGTGGCAAACAGTTCAACCGGAAGTCGTTTCTAGCGTCGCACATGAAGCAACACAGACATCGCTGTAAAACTTGCAACCAAACATTCGGACTAAGAAAAGACTTGAAACAGCACTCGGAGCAAGTTCATGGTCCTGTACTGTATCCGTGCAGTATCTGTGAATATAAAAGCAACAACAGGTGGACACTGAAGGATCATTTCATTCGAAAGCACACCAGCAGGTTCGACTATTCGTGTGCAGTCTGTGGAAAACAATTCAAGATCAAGAACGACATGGTGCAGCACGCGAAGCAAATGCATAGCAACGCATCTCCAATTATTTGCACAGTTTGCGGTCACGCATGCAAGAGCGTGCCTTCCTTGAAGTCTCACATGAAATACAAGCACTACAAGACTGCGTACCAGTGTAATTTGTGCAAACGTTGTATGACGACGCAGAAGAACCTGGAGCAACATCTGTTGTGGCACAAGAGGAAGGAGAAAGTGGTTTGCCAAACTTGTGGCAAGACTTTTGGTCAAAAGAGGGATCTGGATCTTCATTTGAGGATCCACGAAGGTATCAGGCCGTTCTCTTGCCCGGTTTGTGGCAAGAAGTTCCCGAGAAGAACTGCTCAGGAGCAACATATTTTGATACACACGGGTCAAAGACCGTATACTTGTGATATTTGTGGACAGAAGTTTGCGCAAAAACCGGGACTGATCTGTCACAGGAAGCGACATCCTGGACCTCTGCCACAGCTCCCTGTGATCTCCGTTAGAAAGATCATCGCGGATTTTACTCAGGGACTGAACGATGCCGCGATGGAGAAGAAGAATTAG
Protein Sequence: MSASQEETAISLQNNPGQRSKKKTLTRLECDHCRRKFLKKSNLAEHLKKHRHKCSDCPKTFRLRRYLASHIEKIHRRQVYDCSVCEYKSNNKGTLKNHYIRLHTTNYNFACDTCGKQFKIKKALNHHVKQNHSDAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFICRICRRGMTTQENLEQHLTWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKTFRRQTAQEQHVLIHTGKRPYVCDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTDSPALDPLNGSDTNPLEEPCFIKIENSYSLAKTERRRQRERIRKMNLKIRTITSVDCTTKKFKIEPSRSNKIEATISKKQTEPLLECDFCGKQFNRKSFLASHMKQHRHRCKTCNQTFGLRKDLKQHSEQVHGPVLYPCSICEYKSNNRWTLKDHFIRKHTSRFDYSCAVCGKQFKIKNDMVQHAKQMHSNASPIICTVCGHACKSVPSLKSHMKYKHYKTAYQCNLCKRCMTTQKNLEQHLLWHKRKEKVVCQTCGKTFGQKRDLDLHLRIHEGIRPFSCPVCGKKFPRRTAQEQHILIHTGQRPYTCDICGQKFAQKPGLICHRKRHPGPLPQLPVISVRKIIADFTQGLNDAAMEKKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00230819;
90% Identity: iTF_00230819;
80% Identity: -