Bsib019539.1
Basic Information
- Insect
- Bombus sibiricus
- Gene Symbol
- -
- Assembly
- GCA_014737505.1
- Location
- JACXIM010000175.1:5056997-5060926[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0023 0.26 12.2 3.4 2 23 79 100 78 100 0.97 2 18 3.2e-05 0.0036 18.0 1.9 1 23 102 125 102 125 0.96 3 18 0.0021 0.24 12.3 0.9 1 23 130 153 130 153 0.96 4 18 0.00024 0.027 15.3 2.2 1 23 159 182 159 182 0.95 5 18 0.0009 0.1 13.5 2.0 2 23 189 211 188 211 0.95 6 18 0.0059 0.66 10.9 0.3 1 23 216 238 216 238 0.96 7 18 0.00053 0.059 14.2 0.5 3 23 246 265 245 265 0.98 8 18 4.7e-06 0.00053 20.7 0.1 1 23 271 293 271 293 0.97 9 18 0.00041 0.046 14.6 0.4 1 23 299 321 299 321 0.97 10 18 4.3e-06 0.00048 20.8 1.4 2 23 424 445 423 445 0.96 11 18 0.013 1.4 9.9 2.9 1 23 447 470 447 470 0.90 12 18 0.011 1.3 10.0 0.9 1 23 475 498 475 498 0.95 13 18 0.0023 0.26 12.2 0.3 1 23 504 527 504 527 0.94 14 18 0.0028 0.31 11.9 2.2 3 23 535 556 533 556 0.95 15 18 0.00036 0.04 14.7 3.2 1 23 561 583 561 583 0.97 16 18 1.4e-05 0.0016 19.1 0.3 2 23 590 611 589 611 0.97 17 18 1.2e-05 0.0013 19.4 0.1 1 23 617 639 617 639 0.98 18 18 0.00055 0.062 14.2 1.5 1 23 645 667 645 667 0.98
Sequence Information
- Coding Sequence
- ATGGCTACGACTGTTCTGGATCGCATTAGAAGAGCGAGAAGAATCTTGGATCCTTTGAGCGAAGAATTCAAGACCGACTCGCAGGCTCACTTACCGTTAGAGCTCCCCGAGGTATACGAGAATTGGATCGACAAAGAAAACTTCGAGATCATGTCCGCTAGCCAAGAGGAAACCGCAGTATCTCTTCAAAACAATCCCGGTCAACGATCCAAAAAGAAGACCTTGACTCGTCTAGAATGCGACCACTGTCGACGGAAGTTCTTGAAGAAGAGTAACTTGGCGGAGCATTTGAAGAAACACAGACACAAGTGTTCAGACTGTCCGAAGACTTTCAGACTTCGTCGATACCTAGCTTCTCACATAGAGAAGATCCATCGACGTCAAGTTTATGATTGCAGTGTTTGCGAATACAAAAGCAATAACAAGGGAACACTGAAGAATCACTACATTCGTCTGCACACGACTAATTACAATTTCGCTTGCGACACATGTGGCAAACAATTCAAGATAAAGAAAGCATTGAACCATCACGTGAAACAGAATCATAGCGACGCGCCACCGATAGTATGCGACGTTTGTGGCCACTTCAGCAAGAATCTTCATGCTCTCAAGGCTCATATGAAGTACAGACACTATAAGCCTGAGTTTATCTGCAGAATCTGCAGAAGAGGGATGACGACTCAAGAGAATTTGGAGCAACACTTAACCTGGCACGAGACCAGGGAAAAGGTGCTGTGTCCCACGTGTGGAAAGAGATTTCGAGGTCGAGATTTGGACTCTCATATGCGAGTGCATACAGGAGTCAAGCCTTTTCCTTGTCCTGTTTGTGGAAAGACATTCAGAAGGCAGACTGCCCAAGAGCAACATGTTCTCATTCATACGGGAAAAAGACCGTATGTTTGCGATATCTGTGGGCAAGCGTTTGCTCAGAAACCTGGGCTGATTTGCCATAGAAAGCGCCATCCTGGACCTCTGCCTCCATTACCTGTCGTATCCATCAAGAATATCGTCACGGATTCTCCTGCACTGGACCCTCTTAATGGTAGCGACACGAATCCTCTGGAAGAACCTTGTTTCATCAAAATAGAAAACTCGTACTCTTTGGCAAAAACGGAACGAAGGCGACAAAGGGAAAGAATCAGAAGAATGAACTTAAAACTTCGCACTGTAACATCCGTAGGTTGTACAACGAAAAAGTTAAAAATCGAACCAAGTCGAACCAACAAAATTGAAGCAAGAATCTCGAAAAAGCAAACTGAACCTCTACTGGAGTGTGATTTCTGTGGCAAACAGTTCAACCGGAAGTCGTTTCTAGCGTCGCACATGAAGCAACACAGACATCGCTGTAAAACTTGCAACCAAACATTCGGGCTAAGAAAAGACTTGAAACAACACTCGGAGCAAGTTCATGGTCCTGTACTATATCCGTGCAGTATCTGTGAATATAAAAGCAACAACAGGTGGACGTTGAAGGATCATTTCATTCGAAAACACACCAGCAGGTTCGACTATTCGTGTGCAGTCTGTGGAAAACAATTCAAGATCAAGAACGACATGGTGCAGCACGCGAAGCAAATGCATAGCAACGCATCTCCAATTATTTGCACAGTTTGCGGTCACGCTTGCAAGAGCGTGCCTTCCTTGAAGTCTCACATGAAATACAAGCACTACAAGACTGCGTACCAGTGTAATTTGTGCAAACGTTGTATGACGACGCAGAAGAACCTGGAGCAACATCTGTTGTGGCACAAGAGGAAGGAGAAAGTGGTTTGCCAGACTTGTGGCAAGACTTTTGGTCAAAAGAGGGATCTGGACCTTCATTTGAGGATCCACGAAGGTATCAGGCCGTTTTCTTGCCCGGTTTGTGGCAAGAAGTTCCCGAGAAGAACTGCTCAGGAGCAACATATTCTGATACACACGGGTCAAAGACCGTATACTTGTGATATTTGTGGACAGAAGTTTGCGCAAAAACCGGGACTGATCTGTCACAGGAAGCGACATCCTGGACCTCTGCCACAGCTCCCTGTGATCTCCGTTAGAAAGATCATCGCGGATTTTACTCAGGGACTGAACGATGCCGCGATGGAGAAGAAGGAGAATTAG
- Protein Sequence
- MATTVLDRIRRARRILDPLSEEFKTDSQAHLPLELPEVYENWIDKENFEIMSASQEETAVSLQNNPGQRSKKKTLTRLECDHCRRKFLKKSNLAEHLKKHRHKCSDCPKTFRLRRYLASHIEKIHRRQVYDCSVCEYKSNNKGTLKNHYIRLHTTNYNFACDTCGKQFKIKKALNHHVKQNHSDAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFICRICRRGMTTQENLEQHLTWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKTFRRQTAQEQHVLIHTGKRPYVCDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTDSPALDPLNGSDTNPLEEPCFIKIENSYSLAKTERRRQRERIRRMNLKLRTVTSVGCTTKKLKIEPSRTNKIEARISKKQTEPLLECDFCGKQFNRKSFLASHMKQHRHRCKTCNQTFGLRKDLKQHSEQVHGPVLYPCSICEYKSNNRWTLKDHFIRKHTSRFDYSCAVCGKQFKIKNDMVQHAKQMHSNASPIICTVCGHACKSVPSLKSHMKYKHYKTAYQCNLCKRCMTTQKNLEQHLLWHKRKEKVVCQTCGKTFGQKRDLDLHLRIHEGIRPFSCPVCGKKFPRRTAQEQHILIHTGQRPYTCDICGQKFAQKPGLICHRKRHPGPLPQLPVISVRKIIADFTQGLNDAAMEKKEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00230819;
- 90% Identity
- iTF_00230819;
- 80% Identity
- -