Bsor002214.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus soroeensis
Gene Symbol
-
Assembly
GCA_014737365.1
Location
JACXIL010000179.1:1069331-1078423[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.15 14 6.5 6.7 1 23 115 137 115 137 0.97
2 25 6.9e-06 0.00064 20.1 2.0 1 23 143 165 143 165 0.98
3 25 0.097 9.1 7.1 1.9 1 23 172 195 172 195 0.94
4 25 4.1e-06 0.00038 20.8 1.3 1 23 201 223 201 223 0.97
5 25 1.1 1e+02 3.8 3.9 2 20 229 247 228 251 0.82
6 25 1.2e-05 0.0011 19.4 2.4 1 23 258 280 258 280 0.97
7 25 2.1e-07 1.9e-05 24.9 1.0 1 23 284 306 284 306 0.99
8 25 0.037 3.5 8.4 1.1 1 23 312 334 312 334 0.94
9 25 5.8e-06 0.00054 20.4 0.6 1 23 340 362 340 362 0.99
10 25 1.5e-06 0.00014 22.2 2.3 1 23 503 525 503 525 0.98
11 25 0.0048 0.45 11.2 2.3 2 23 531 552 530 552 0.96
12 25 0.00037 0.035 14.7 1.5 1 23 559 582 559 582 0.97
13 25 5.2e-06 0.00048 20.5 2.3 1 23 588 611 588 611 0.93
14 25 0.00039 0.036 14.6 5.5 2 22 617 637 616 641 0.92
15 25 2.8e-06 0.00026 21.3 2.7 1 23 674 696 674 696 0.98
16 25 2.5e-05 0.0023 18.4 0.5 1 23 700 722 700 722 0.97
17 25 0.00014 0.013 16.0 1.4 1 23 852 875 852 875 0.96
18 25 1.8e-05 0.0017 18.8 5.0 1 23 881 903 881 903 0.98
19 25 0.016 1.5 9.5 7.6 1 23 912 935 912 935 0.94
20 25 0.0012 0.11 13.0 1.2 1 23 941 963 941 963 0.95
21 25 1.6e-05 0.0015 18.9 2.4 1 23 968 991 968 991 0.96
22 25 0.001 0.098 13.3 0.9 1 23 997 1019 997 1019 0.98
23 25 8.2e-08 7.6e-06 26.2 0.7 1 23 1023 1045 1023 1045 0.99
24 25 0.00095 0.089 13.4 7.4 1 23 1051 1073 1051 1073 0.99
25 25 6.9e-05 0.0064 17.0 3.2 1 23 1079 1101 1079 1101 0.97

Sequence Information

Coding Sequence
ATGGCATCTAGTAGGTACAATGCGCTAGATCCACTCGCCCCAACTTTTCTGATAGTAAAACTAGAAGATAATTACTTTCGGATACCGACGTCGCTGAGTGTGTTCATGATGAAGGAACCGCCACCGGGTTCCACCGAAGAAAAGAAGGCTCAACCAGCAAAAGAAGATGGCGTTCATTCAACAAAGACAAATCAGACAGAAGAAAAAGTAAAGGACGATTCAAGTAGCAGCGATTCCTTCGAAGACCTCGACGACGCTCCCTTGGACTTCCGAAAGAGAGAACAGGAGCAAGAACAGGAGAAAAATAAATCTGTGAAACCAATACTCCCTAAGAAGAAAGTACACACGTGCGAAATCTGTTACGCGACTTTCGATCGTAAAAGCAAACATACACGGCACATGTTCAAGCACAGTAATTCGAGACCTCATAAGTGTCCTATTTGCGCGAAAGGATTCAAAACCACAGCTCATCTAAGCAGGCACATGGAGGTTCACGATGAACCGGTGAACCTACATGCATGTAGTCTGTGTGACTTCAAAGCACGCACCAAGCCTTATCTGAAGATCCATTATATTAGAAAGCACACGGAAGACTACAACTATAAATGTGAACAATGTGGAAAGATGTTTAAGGTACAATCAGATTATACGACACATGTGAAAGATCATGATACAGAGTCTTGCGTGTGTGATATCTGTGGTTCGTCTTATCCCAGCAAAAGCTCGCTGTACTTCCATAAGCATTACAAACACAAGACGAAGGTGAAGAAGTTCCCCTGTCAGACATGTAAGAAGAAGTTCAAGACGCAGAAGAATTTAGATAATCATATGGAGCTGCACAAGATTAAATACGTTTGTGAACAATGCGGGATGGAATTTAAGACGAAATATGGCCTCACCAAGCATCTGAGGACTCATTCCGGGGAGAAGTCTTATTTGTGCGCGATTTGTGGGAAAACTTTTGGATGTCTCAGCTCGCAGAAGATTCATCTATTGACGCACGTTGGCGAAAGGCCTTACGTATGCGACATTTGCGGTCAGAGTTTCACCCAGAGGTCACCCATGATGTTGCATCGCAGAAAGCACCCTGGGGTGCACCCACCACCTCCTCCGATTAAAATAACAAACCTTCTGCATGGTGTGCAAGACAAAATAATCGTGAACAAGAGCAGCAAGTCGACACAGCGTGATCCGCTCGAGCAAACGTACCTCGTGGTGCAAAACGTCGACAAATACTTCCTCCTCCCCATGGAGCACAAAACATCGACACAGAAACACGAAGATGAGTGCATTACTGGAGATATCACCATTAAGTTGGAGGAACAAGACATACCCGAAGACACGACTGAACAACAGCTAATCGAATCGCCTGAGCGAAAAAATACTCAAATTGACGAAACTGCACAGGTACATACGAATCTATCTGTTCAGACGCCTGTACAATTTTCACAGTGGCTGGACCAATGTTCCAATGGTTCTGAAAGTATAACGAGCAACGAGGAAACGTTTACTTGCGACTACTGTTCGAAGATCTTCAGGAAGAAATACGCATTGCAGAGGCATTTAGAGACTCATAGTAACGCACGGGTGGAATGTTCGGTGTGCCATCGACTCCTGAAGACCAAGAAGACGCTGAAGCTTCATATGATGCTGCACGAAGATACCGGTAAAATATTCGAGTGCTCGGAATGCGGCTTTATGTCGAAACGAAAACAAAGTATGACCCGTCATCAGATCAGGATGCACTCGAAGATCGCCGATTACAAATGTCCACTTTGCCCGAAGACGTTTAAATTTAACGGTGATCTTAAAAGACATCATGAAGCGAAACACGTGGTCGACCCATGTTATTGCGAAGTTTGTGGAAAAACGTATCGAAATAGTCATTTTCTTCGAAAGCACCGGCGCATATCCAAGACACATAGAAACGCTTACACTCGTATATGTTACGGGGCAATTAGGGGTAATCAGAACATAGAGTGTGCGACCTCACAAAACAAGGGTAAAGTGAAGCGAGTATTCAATTGCTCCAAGTGCAAATGGCGATTCAGCAGCTGGAGGTTACTAAATAAGCACATGCAACGACATCTCCTCATCTTTAACTGCGACATTTGTGGAGCCGTGTTTAAGTATAAGGCTTCGTTTTTGAAACATCAAGAATCGCACAAACAATCTGAACAGAAATCAACGCAGCACTTAACCCCGAAGAACAAAGCCATCGCTCCTAAACAACCGAAAGACCAATTAAGAGCTTCTCGCAAACCATCGAGCATTCTTCAAAGAAGAATCGCGTTCCGAGCTTCGAAGAACCTCAAACGCAGAAGCAACGGGCGTTTGAACAACTCTTCTAGTCGCGTAGAAACGAAGAGTATTTCTACCAATAACACAAACTCCAAACATAAGAAAATAAACGACGACGAAACGACTTCGTCGAAAAATCCTACAAAGAAAAAGTTATCTCTAAATTTCAACAATTGTTCGAATCAATTAGAAAATAACGAGAAACAAAGTACACAACAAGAAGATCTATATAAGAAACTCAACGACGGTACTTATACCTGTGATATCTGCCAAACGACCTTCGAACAGAAGAGCAAGATCCTGCGTCATATTACCAGCAAGCACAGTTTCCACCGACCCTTCAAATGTTCAACTTGCGACAAAACCTTCAAGTACAAATGCGATTTGAAAGCTCATCGTCTAATCCATCAAGACGTCGACTCCAGTTTATTACATTGCTGCGACAAATGTGATTATCGTACGAAGACGAAGAACAACCTCAAGTCCCATTACATTAGAAGACATACGGACGATTATAAATTCGCGTGTGAACACTGTGGGAAGCGTTTCAAAATGGAATGGGACTTGAAATTCCACATTGGAACTCACAGCAATTCGCAGCACATGTGTGACATCTGTGGAAAATTTTACACGAGCAACTATTCTTTGTATAAGCACAGGAAAGTAGCTCATTTGAACGAATATAAGTTCCAATGTAACGTTTGTAATAAAAGGCTCTTGACACAGGAGAACTTAGACAATCATATGCAACAACACAGTAGAACGTACGAGTGTAAAGACTGTGGAAAGGTATTTGCATCAAAAAGGTATCTAGCGACTCATATGACTACACATACAGGCGTGAAACCGTATACTTGTCATATTTGCAAGAAAAACTTTAGAACGTCGCATATGAGAAATACGCATCTTTTAACGCATTCTACCGAAAGGCCACATATCTGTGATCTTTGTGGACAGTCCTTTAAGAGAAGATATTATATGATAGAGCATAGAAGGAAACATCCTGACGCTCATTTGTCTTCGCCTCCTGTGCCTCTTGGGAAAAAGAAAAGCGTTACCGACACTGTGGCTGAATGCCAAGCAGAGATTTTGCTCTAA
Protein Sequence
MASSRYNALDPLAPTFLIVKLEDNYFRIPTSLSVFMMKEPPPGSTEEKKAQPAKEDGVHSTKTNQTEEKVKDDSSSSDSFEDLDDAPLDFRKREQEQEQEKNKSVKPILPKKKVHTCEICYATFDRKSKHTRHMFKHSNSRPHKCPICAKGFKTTAHLSRHMEVHDEPVNLHACSLCDFKARTKPYLKIHYIRKHTEDYNYKCEQCGKMFKVQSDYTTHVKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKTKVKKFPCQTCKKKFKTQKNLDNHMELHKIKYVCEQCGMEFKTKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVHPPPPPIKITNLLHGVQDKIIVNKSSKSTQRDPLEQTYLVVQNVDKYFLLPMEHKTSTQKHEDECITGDITIKLEEQDIPEDTTEQQLIESPERKNTQIDETAQVHTNLSVQTPVQFSQWLDQCSNGSESITSNEETFTCDYCSKIFRKKYALQRHLETHSNARVECSVCHRLLKTKKTLKLHMMLHEDTGKIFECSECGFMSKRKQSMTRHQIRMHSKIADYKCPLCPKTFKFNGDLKRHHEAKHVVDPCYCEVCGKTYRNSHFLRKHRRISKTHRNAYTRICYGAIRGNQNIECATSQNKGKVKRVFNCSKCKWRFSSWRLLNKHMQRHLLIFNCDICGAVFKYKASFLKHQESHKQSEQKSTQHLTPKNKAIAPKQPKDQLRASRKPSSILQRRIAFRASKNLKRRSNGRLNNSSSRVETKSISTNNTNSKHKKINDDETTSSKNPTKKKLSLNFNNCSNQLENNEKQSTQQEDLYKKLNDGTYTCDICQTTFEQKSKILRHITSKHSFHRPFKCSTCDKTFKYKCDLKAHRLIHQDVDSSLLHCCDKCDYRTKTKNNLKSHYIRRHTDDYKFACEHCGKRFKMEWDLKFHIGTHSNSQHMCDICGKFYTSNYSLYKHRKVAHLNEYKFQCNVCNKRLLTQENLDNHMQQHSRTYECKDCGKVFASKRYLATHMTTHTGVKPYTCHICKKNFRTSHMRNTHLLTHSTERPHICDLCGQSFKRRYYMIEHRRKHPDAHLSSPPVPLGKKKSVTDTVAECQAEILL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00220717;
90% Identity
iTF_00225373;
80% Identity
-