Bpic008720.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus picipes
Gene Symbol
-
Assembly
GCA_014737485.1
Location
JACXIP010000011.1:12323808-12331420[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.15 15 6.5 6.7 1 23 80 102 80 102 0.97
2 25 6.6e-06 0.00066 20.2 2.0 1 23 108 130 108 130 0.98
3 25 0.094 9.4 7.1 1.9 1 23 137 160 137 160 0.94
4 25 3.9e-06 0.00039 20.9 1.3 1 23 166 188 166 188 0.97
5 25 1 1e+02 3.8 3.9 2 20 194 212 193 216 0.82
6 25 1.1e-05 0.0011 19.5 2.4 1 23 223 245 223 245 0.97
7 25 2e-07 2e-05 25.0 1.0 1 23 249 271 249 271 0.99
8 25 0.036 3.6 8.4 1.1 1 23 277 299 277 299 0.94
9 25 5.6e-06 0.00056 20.4 0.6 1 23 305 327 305 327 0.99
10 25 0.001 0.1 13.3 4.3 1 23 462 484 462 484 0.97
11 25 0.0047 0.47 11.2 2.3 2 23 490 511 489 511 0.96
12 25 0.00048 0.048 14.3 1.4 1 23 518 541 518 541 0.97
13 25 5e-06 0.0005 20.6 2.3 1 23 547 570 547 570 0.93
14 25 0.00019 0.019 15.6 5.4 2 22 576 596 575 600 0.92
15 25 3.9e-05 0.0039 17.8 3.8 1 23 633 655 633 655 0.98
16 25 2.4e-05 0.0024 18.4 0.5 1 23 659 681 659 681 0.97
17 25 0.00014 0.014 16.0 1.4 1 23 811 834 811 834 0.96
18 25 1.7e-05 0.0017 18.9 5.0 1 23 840 862 840 862 0.98
19 25 0.015 1.6 9.6 7.6 1 23 871 894 871 894 0.94
20 25 0.0012 0.12 13.1 1.2 1 23 900 922 900 922 0.95
21 25 1.6e-05 0.0016 19.0 2.4 1 23 927 950 927 950 0.96
22 25 0.001 0.1 13.3 0.9 1 23 956 978 956 978 0.98
23 25 1.7e-07 1.7e-05 25.2 0.5 1 23 982 1004 982 1004 0.98
24 25 0.00092 0.092 13.4 7.4 1 23 1010 1032 1010 1032 0.99
25 25 6.6e-05 0.0067 17.0 3.2 1 23 1038 1060 1038 1060 0.97

Sequence Information

Coding Sequence
ATGATGAAGGAACCGCCACCGGGTTCCACCGAAGAAAAGAAGGCTCAACCAGCAAAAGAAGATGGCGTTCATTCAACAAAGACAAATCAGATAGAAGAAAAAATAAAGGACGATTCAAGTAGCAACGATTCCTTCGAAGATCTCGACGACGCCCCCTTGGACTTCCGAAAGAGAGAACAGGAGCAAGAACAGGAGAAAAATAAATCTGTGAAACCAATACTCCCTAAGAAGAAAGTACACACGTGCGAGATCTGTTACGCGACTTTCGATCGTAAAAGTAAACATACACGGCACATGTTCAAGCACAGTAACTCGAGACCTCATAAGTGTCCTATTTGCGCGAAAGGATTCAAAACCACAGCTCATCTAAGCAGGCACATGGAGGTTCACGATGAACCGGTAAACCTACATGCATGTAGTCTGTGTGACTTCAAAGCACGCACCAAGCCTTACCTGAAGATCCATTATATTAGAAAGCACACAGAAGACTATAACTATAAATGTGAACAATGTGGAAAGATGTTTAAGGTACAATCAGATTATACGACACATGTGAAAGATCATGATACAGAGTCTTGCGTGTGTGATATCTGTGGCTCGTCTTATCCCAGCAAAAGCTCACTGTACTTCCATAAGCATTACAAACACAAGACGAAGGTGAAGAAGTTCCCCTGTCAGACATGTAAGAAGAAATTCAAGACGCAGAAAAATTTAGATAACCATATGGAGCTGCACAAGATTAAATACGTTTGTGAACAATGCGGGATGGAATTTAAGACAAAATATGGTCTCACCAAGCATCTGAGGACTCATTCCGGGGAAAAGTCTTATTTGTGCGCGATTTGTGGGAAAACTTTTGGATGTCTCAGCTCACAAAAGATTCATCTGTTGACGCACGTTGGCGAAAGGCCTTACGTATGCGACATTTGCGGTCAGAGTTTCACCCAGAGGTCACCCATGATGTTGCATCGCAGGAAGCACCCTGGGGTGCACCCACCACCTCCTCCAATTAAAATAACAAACCTGCTACACGGTGTACAAGACAAAATAATCGTGAACAAGAGTAGCAAGTCGACACAGCGTGATCCGCTCGAGCAAACGTACCTCGTGGTGCAAAACGTCGATAAATACTTCCTCCTTCCCATGGAGCACAAAACATCGACACAGAAACACGAAGAAGAGTGCATTACGGGAGATATTACCATCAAGTTGGAAGAAAAAGACATACCTGAAGACACGACTGAACAACAACTAATCGATCCTCAAATTAACGAAACTGCTCAGGTACATACGAATCCATCTGTTCAGATGCCTGTACAATTTTCTCATTGGTTGGACCAATGTTCCAATGGTTCTGAAAGTATGACGAGCAACGAGGAAATGTTTACTTGCGACTGTTGTTCGAAGATCTTCAGGAAGAAGTACGCATTGCAGAGGCATTTAGAGACTCATAGTAACGCACGGGTGGAATGTTCGGTGTGCCATCGACTCCTAAAGACCAAGAAGACGCTGAAGCTTCATATGATGCTGCACGAAGATACCGGTAAAATATTCGAGTGCTCGGAATGCGGCTTTATGTCGAAACAAAAGCAAAGTATGACTCGTCATCAGATCAGGATGCACTCGAAGATCGCCGATTACAAATGTCCACTTTGCCCAAAGACGTTTAAATTTAACGGTGATCTTAAAAGACATCATGAAGCGAAACACGTGGTCGACCCATGTTATTGCGAGATTTGTGGAAAAACGTATCGAAATAGTCATTTTCTTCGAAAGCACCGGCGCATATCCAAGTCACATAGAAACGCTTACACTCGTGTATGTTACGGGGCAATTAGGGGTAATCAGAACATAGAGTGTGCGACCTCGCAAAACAAGGGTAAAGTGAAGCGAGTATTCAATTGCTCCAAGTGCAAACGGCAATTCAGCAGCTTGAGGTTACTAAATAAGCACATGCAACGACATCTCCTCATCTTTAACTGTGACATTTGTGGAGCCGTGTTTAAGTATAAGGCTTCGTTTTTGAAGCATCAAGAATCGCACAAACAATCTGAACAGAAACCAACGCAGCACTTAACCCTGAAGAATAAAGCCATCGCTCCTAAACAACCGAAAGACCAATTAAGAGCTTCTCGCAAATCATCGAGCATTCTTCAAAGAAGAATCGCGTTCCGAGCTTCGAAGAACCGCAAACGTAGGAGTAACGGGCGTTTGAATAACTCTTCTAGTCGCGCAGAAACGAAAAGTATTTCAACCAATAACACAAACTCCATACATAGGAAAATAAACGACGACGAAACGACTTCGTCGAAAAATCCTACAAAGAAAAAGTTATCTCTAAATTTCAACAATTGTTCGAATCAATTACAAAATAACGAGAAACAAAGTACACAACAAGAAGATCTATATAAGAAACTCAACGACGGTACTTATACCTGTGATATCTGCCAAACGACCTTCGAACAGAAGAGCAAGATCCTCCGTCATATTACCAGCAAGCACAGCTTCCACCGACCCTTCAAATGTTCAACTTGCGACAAAACCTTCAAGTACAAATGCGACTTGAAAGCTCATCGTTTAATCCATCAAGACGTCGACTCCAGTTTATTACATTGCTGCGACAAATGTGATTATCGTACGAAGACGAAGAACAATCTCAAGTCTCATTACATTAGAAGACACACGGACGATTATAAATTCGCGTGTGAACACTGTGGGAAGCGTTTCAAAATGGAATGGGACTTGAAATTCCACATTGGAACTCACAGCAATTCGCAGCACATGTGTGACATCTGTGGAAAATTTTACACGAGCAACTATTCTTTATATAAGCACAGGAAAGTAGCTCATTTGAACGAATATAAGTTCCAATGTAACGTTTGTAATAAAAGGCTATTGACACAGGAGAACTTAGACAATCATATGCAACAACACAGTAGAACGTACGAGTGTAAAGATTGTGGAAAGGTATTTGCATCAAAAAGGTATCTTGCAACTCATATAACTACACATACAGGCGTGAAACCGTATACTTGTCATATTTGCAAGAAAAACTTTAGAACGTCGCATATGAGAAATACGCATCTTTTAACGCATTCTACGGAAAGGCCACATATCTGTGACCTTTGTGGACAGTCCTTTAAGAGGAGATATTATATGATAGAGCATAGAAGGAAACATCCTGACGCTCATTTGTCTTCGCCTCCTGTGCCTCTTGGGAAAAAGAAAAGCATTACCGACACTGTGACTGAACGCCAAGCAGAGATTTCGCTGTAA
Protein Sequence
MMKEPPPGSTEEKKAQPAKEDGVHSTKTNQIEEKIKDDSSSNDSFEDLDDAPLDFRKREQEQEQEKNKSVKPILPKKKVHTCEICYATFDRKSKHTRHMFKHSNSRPHKCPICAKGFKTTAHLSRHMEVHDEPVNLHACSLCDFKARTKPYLKIHYIRKHTEDYNYKCEQCGKMFKVQSDYTTHVKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKTKVKKFPCQTCKKKFKTQKNLDNHMELHKIKYVCEQCGMEFKTKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVHPPPPPIKITNLLHGVQDKIIVNKSSKSTQRDPLEQTYLVVQNVDKYFLLPMEHKTSTQKHEEECITGDITIKLEEKDIPEDTTEQQLIDPQINETAQVHTNPSVQMPVQFSHWLDQCSNGSESMTSNEEMFTCDCCSKIFRKKYALQRHLETHSNARVECSVCHRLLKTKKTLKLHMMLHEDTGKIFECSECGFMSKQKQSMTRHQIRMHSKIADYKCPLCPKTFKFNGDLKRHHEAKHVVDPCYCEICGKTYRNSHFLRKHRRISKSHRNAYTRVCYGAIRGNQNIECATSQNKGKVKRVFNCSKCKRQFSSLRLLNKHMQRHLLIFNCDICGAVFKYKASFLKHQESHKQSEQKPTQHLTLKNKAIAPKQPKDQLRASRKSSSILQRRIAFRASKNRKRRSNGRLNNSSSRAETKSISTNNTNSIHRKINDDETTSSKNPTKKKLSLNFNNCSNQLQNNEKQSTQQEDLYKKLNDGTYTCDICQTTFEQKSKILRHITSKHSFHRPFKCSTCDKTFKYKCDLKAHRLIHQDVDSSLLHCCDKCDYRTKTKNNLKSHYIRRHTDDYKFACEHCGKRFKMEWDLKFHIGTHSNSQHMCDICGKFYTSNYSLYKHRKVAHLNEYKFQCNVCNKRLLTQENLDNHMQQHSRTYECKDCGKVFASKRYLATHITTHTGVKPYTCHICKKNFRTSHMRNTHLLTHSTERPHICDLCGQSFKRRYYMIEHRRKHPDAHLSSPPVPLGKKKSITDTVTERQAEISL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00220717;
90% Identity
iTF_00220717; iTF_00229487;
80% Identity
-