Bsor009107.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus soroeensis
Gene Symbol
rdx
Assembly
GCA_014737365.1
Location
JACXIL010000186.1:2567941-2571707[+]

Transcription Factor Domain

TF Family
BTB
Domain
zf-C2H2|ZBTB
PFAM
PF00651
TF Group
Zinc-Coordinating Group
Description
The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.8e-35 8.6e-33 112.9 0.7 4 109 187 290 184 291 0.96
2 2 2.8 8.4e+02 0.3 0.0 80 109 293 322 289 323 0.86

Sequence Information

Coding Sequence
ATGGTAACTTGCATCGAAGCGAACGCCGCAAAGGTCTTATGTGCACAGGTGAAGGTGGTTAAGTTCAGCTACATGTGGACGATAAATAACTTCAGCTTTTGCCGAGAGGAAATGGGAGAAGTACTAAAGTCGTCCACCTTCTCAGCAGGGGCCAACGATAAATTAAAATGGTGCCTAAGAGTGAATCCTAAGGGTCTGGATGAGGAGAGCAAAGACTACCTGTCTCTGTATCTCCTTCTCGTTTCGTGCAACAAATCTGAAGTCAGAGCAAAGTTCAAATTTTCTATTCTTAATGCCAAAAGAGAAGAAACCAAAGCAATGGAGAGCCAACGTGCTTACAGGTTCGTCCAAGGTAAAGATTGGGGTTTTAAGAAGTTCATTAGGAGAGATTTCTTATTGGATGAAGCCAATGGACTTTTGCCCGACGATAAACTCACGATATTCTGTGAGGTATATACCTTTGTCAGCGTAGTGGCGGACAGCGTGAATATTTCCGGGCAAAGTAATACTATACAATTCAAAGTTCCAGAATGTCGACTACCCGATGACCTTGGGCTTCTGTTTGAAAACCAAAAATTCAGCGATGTCACGCTGACAGTGTGTGGAAGGGAATTTCAGGCGCACAAAGCCATCCTCGCAGCGCGAAGTCCCGTTTTCTCGGCGATGTTCGAGCATGAGATGGAGGAAAGGAAACAAAACCGCGTGGACATCACCGACGTGGACCACGAAGTGTTACGAGAGATGTTGCGGTTTATATACACCGGGAAGGCAGCAAATTTGGAAAAAATGGCTGACGATTTACTAGCTGCGGCGGACAAATACGCGTTAGAAAGGTTGAAAGTCATGTGCGAGGAAGCATTATGCACGAGTTTAGCAATCGAAAACGCAGCCGACATCCTGATTCTTGCTGATCTTCATAGCGCCGATCAACTCAAGGCACAGGCCATAGATTTTATCAATACACACGCGACGGACGTGATGGACACAGCGGGTTTTAAATCGATGGTAAACTCTCATCCGCATCTCATAGCGGAAGCGTTTCGAGCGTTAGCCACCCAACAAATTCCACCGATCGGACCGCCCAGGAAGCGAGTGAAACAGAGCTGA
Protein Sequence
MVTCIEANAAKVLCAQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKSEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTIFCEVYTFVSVVADSVNISGQSNTIQFKVPECRLPDDLGLLFENQKFSDVTLTVCGREFQAHKAILAARSPVFSAMFEHEMEERKQNRVDITDVDHEVLREMLRFIYTGKAANLEKMADDLLAAADKYALERLKVMCEEALCTSLAIENAADILILADLHSADQLKAQAIDFINTHATDVMDTAGFKSMVNSHPHLIAEAFRALATQQIPPIGPPRKRVKQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00227340; iTF_00217813; iTF_00225306; iTF_01267649; iTF_01268363; iTF_01269138; iTF_01266944; iTF_01474785; iTF_00756739; iTF_01065638; iTF_01069736; iTF_00961897; iTF_01068363; iTF_00306351; iTF_00738447; iTF_01473265; iTF_00088114; iTF_01069042; iTF_00217139; iTF_01130901; iTF_01066327; iTF_00118078; iTF_01067678; iTF_01070430; iTF_00182688; iTF_00222594; iTF_01200290; iTF_01422306; iTF_00866083; iTF_00864711; iTF_00861965; iTF_00864047; iTF_00866769; iTF_00861242; iTF_01393635; iTF_01389543; iTF_01391284; iTF_00011232; iTF_00228036; iTF_00303172; iTF_00228741; iTF_00220649; iTF_00223945; iTF_00224619; iTF_01418412; iTF_00219182; iTF_00024688; iTF_01420337; iTF_00215090; iTF_00221330; iTF_00982354; iTF_01419701; iTF_00219865; iTF_00218493; iTF_00223261; iTF_00225983; iTF_00963263; iTF_00087269; iTF_01514886; iTF_00460903; iTF_01254887; iTF_00684840; iTF_01390409; iTF_00280651; iTF_01271307; iTF_01417771; iTF_00131372; iTF_00841164; iTF_00863340; iTF_01392108; iTF_01394444; iTF_01538060; iTF_00676845; iTF_00883117; iTF_00881366; iTF_00882230; iTF_01229102; iTF_01408366; iTF_00140655; iTF_00216463; iTF_01488783; iTF_00168592; iTF_01273863; iTF_00351184; iTF_00438834; iTF_01273170; iTF_00646064; iTF_01214128; iTF_01419058; iTF_00295347; iTF_00962579; iTF_00980244; iTF_01207444; iTF_01407476; iTF_01489492; iTF_00939701; iTF_01102165; iTF_01101445; iTF_00086390; iTF_00983030; iTF_01269878; iTF_00885239; iTF_00233304; iTF_00880568; iTF_00264377; iTF_00280038; iTF_01002170; iTF_00652891; iTF_01049018; iTF_01169242; iTF_00676092; iTF_01228444; iTF_00252157; iTF_00414397; iTF_01497533; iTF_00215774; iTF_01423006; iTF_00089663; iTF_00754847; iTF_00762623; iTF_01199487; iTF_01409279; iTF_01420991;
90% Identity
iTF_00633709;
80% Identity
iTF_00087269;