Bson016382.1
Basic Information
- Insect
- Bombus sonorus
- Gene Symbol
- bab1
- Assembly
- GCA_029958995.1
- Location
- JARWAU010000017.1:3793379-3795318[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.6e-16 1.1e-12 48.0 0.1 1 45 341 385 341 385 0.97
Sequence Information
- Coding Sequence
- ATGGCGAGTACCTCCCAGCAGTACTGTTTGCGCTGGAACAATCATCGTTCTAATTTACTGACAGTGTTCGATGAGTTGCTGCAAAATGAGGCATTCACTGACGTGACTTTGGCAGTTGACGGAGGTGCGTCTGTCAAATGCCACAAGATGGTCCTAGCAGCATGTTCCTCCTACTTCCAAACTCTGTTCATTGACTTACCATGCAAGCATCCTATCGTCGTATTGAAAGACGTGAAGTATTCTGAGATCAAAGCCATCCTGGAGTATATGTACCGAGGCGAAGTCAACGTGGCTCAAGAGCAATTGGCTGGGTTATTAAAAGTCGCGGAAGTACTAAAGGTGAAGGGGTTGGTTGAAGAAAATGGCTCCCAGGGTCGTCGTGAAGAGGTTGAGACCTCTATGTCACCTCCACCGGCCATAAGCACCAGTACAACCAGCAGCGCAGCTCACAGTAGTGATCACACGTCTCCTCCACATTCCACGGGGACTACTTACGATATTTATGGCAAATCACCAGCTGATAGAAGTAGCCGTTTACCGCTGCCAATGTGGCCTCTGCCAGGGATTCCCATCACTCATTCTAGCTCCAGTCACCAGACGGCGACACATCAACATTCTGCCATGTTAAGCGGGTCATCATCCATTTTAACCGGTTTTGAGACTTCTCCATTGAAACGCAGGAAACTCTCAAATATATTAATGAACAGAGACACACCGATTCTCAGAACGGTACTGGGTCAAGGTCACGCGGATAGTTCCCAAGGGATTCCCCTCCTACACCCGGATAGCCACGAAAATCAGTTCAGAAGCAACAGTAATGGCTCCTCGAATGAGAATGACAGACGCAGTAGTACGGATGTAGTTCATGGGGATCCTGCGCATAGTCCTTATACTGATGTGTCTATAATGGATGAAGACGATAAGCAAGCATCGCCACAGTCATATATTCCAGACATTAAACCAgGGATGGTTAACTACGTACCAGCGCAAAAGCCAGAATGGAAACGGTACAAGCAATACACGAGGGACGACATAATGTCTGCGATCGAGGCAGTACGTTCGGGAATGAGTGCCCTCCAGGCGGCACGTAAGTATGGAGTACCCTCTCGAACTCTTTACGATAAAGTGAAAAAGCTAGGAATCACGACATCACGACCATTTAAACGTGGCTCGAATGGTAGTGGCGCCTGTTTTCCTTATGGAATCGGTGGTAACGCAAATGGCAACATCTACAGCGGTGCCCTCTCGGAAAACGAGAACGAGAGTGGCAGTGTGATCGAAGGTTCTGGATCTCTCCTCGATGCGTATAAGTCGAGAGACGGTCTTGTAGACCGGGAGATGTTGGACGTCAGTCGTTGTACCTCTAGCCCCATAGTGCATTCCGTGAAACAGCAGAACAACGAAGATCAGGTCGAAGATCTCTCTATAAGTCGTAAGTCGGATGTTCGTGTGATAGTCCCTCCACCATCAGTGATCAAGGACGAGGAGGATATTGGCTCCGATTCGTGTAGTCACAATTAA
- Protein Sequence
- MASTSQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLAVDGGASVKCHKMVLAACSSYFQTLFIDLPCKHPIVVLKDVKYSEIKAILEYMYRGEVNVAQEQLAGLLKVAEVLKVKGLVEENGSQGRREEVETSMSPPPAISTSTTSSAAHSSDHTSPPHSTGTTYDIYGKSPADRSSRLPLPMWPLPGIPITHSSSSHQTATHQHSAMLSGSSSILTGFETSPLKRRKLSNILMNRDTPILRTVLGQGHADSSQGIPLLHPDSHENQFRSNSNGSSNENDRRSSTDVVHGDPAHSPYTDVSIMDEDDKQASPQSYIPDIKPGMVNYVPAQKPEWKRYKQYTRDDIMSAIEAVRSGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGSGACFPYGIGGNANGNIYSGALSENENESGSVIEGSGSLLDAYKSRDGLVDREMLDVSRCTSSPIVHSVKQQNNEDQVEDLSISRKSDVRVIVPPPSVIKDEEDIGSDSCSHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01071088;
- 90% Identity
- iTF_01419560;
- 80% Identity
- iTF_00228759;