Bdah017773.1
Basic Information
- Insect
- Bombus dahlbomii
- Gene Symbol
- ECU06_1150_1
- Assembly
- GCA_037178635.1
- Location
- CM074115.1:5955552-5958629[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 9e-05 0.0084 16.8 3.5 1 21 19 39 19 40 0.95 2 18 0.013 1.2 10.0 0.4 1 23 87 110 87 110 0.92 3 18 0.00021 0.02 15.7 1.7 1 23 142 164 142 164 0.98 4 18 3.4e-05 0.0032 18.2 1.6 1 23 170 193 170 193 0.96 5 18 1.4e-05 0.0013 19.4 0.3 1 23 199 221 199 221 0.98 6 18 9.8e-08 9.1e-06 26.2 1.0 1 23 227 249 227 249 0.98 7 18 1.6e-05 0.0015 19.2 1.8 1 23 255 277 255 277 0.98 8 18 2.2e-05 0.002 18.8 1.9 1 23 283 305 283 305 0.96 9 18 5.6e-05 0.0052 17.5 1.7 2 23 312 334 311 334 0.96 10 18 0.00055 0.052 14.4 0.1 2 23 363 385 362 385 0.96 11 18 6.3e-05 0.0059 17.3 6.4 1 23 456 478 456 478 0.99 12 18 0.00028 0.026 15.3 1.7 1 23 506 528 506 528 0.99 13 18 8.2e-05 0.0076 17.0 0.7 2 23 535 557 534 557 0.94 14 18 0.00027 0.026 15.3 0.0 1 23 563 585 563 585 0.97 15 18 0.00066 0.061 14.1 1.2 1 23 591 613 591 613 0.97 16 18 0.0021 0.2 12.5 9.7 1 23 619 641 619 641 0.97 17 18 1.8e-05 0.0016 19.1 0.0 1 23 647 669 647 669 0.96 18 18 0.0093 0.87 10.5 3.1 5 23 678 696 676 697 0.93
Sequence Information
- Coding Sequence
- ATGGCAGAAATGATGAAAGTAATGCTACCTTCTttgagagaaataaaaaatcaatatacGTGCAAACACTGTCGACAgatttttgaaagaaaataccaCTTATCCCGACATATACTCCAATGTAAAACTGGCAGTTTTACTGAACGCACTACATCAAATGCGAAAGATGTTGATGAAACAGAGGATAAAGATATGAAAAGCGAAAATCGAAAAGATCTaagattatttcaaaaatataaaaagaataaagttgAAACGTATCCATGCATATATTGCGATTATACAgtcaaacaaaaaaaattgcTCGAACTACATTTGTTGCAATCGCATTCAGAGTTTACCAGGAAGAAggacaaaaaattaaaatgtgcCGATCGGGAAATGGTTATGCGCGCCAAAATGGAAATCGATGGGAAAGTTTATTATCATTGTAACGAATGTGGTAAAAATCTTTATTCGCCGTATACGTTCTTCTGGCATGTGCGTATACATACTGGAGAACGACCATATACTTGTCATCTTTGTGGCAAACAGTTTCGTATAAATCAAGGATTAGCGAGACATTTACGAGATACGCATGCAGgcataaaaaattttccatgTGACATATGCGGTCGAATGTTTTCGACAAAACGTAGCGCGGAAGATCATAAACGTATACATACTGGTGAACGAccatatatttgtaatatttgtggAAAATCATTCAAACAAAAAGCTTCTCTATTTGTACATAATCGCACTCATTCAGATGTGTTTCCtttcaaatgtaattattgCGATCAGAACTTTCGAACGAGACCATTACTCATGTTGCATGTAAAGAAACATACAGGTGAAAAGCCACACGCATGCGATATATGCGATCGACGGTTCCGTATAAAATACGAGCTAAAGCGTCATCGTTTAATTCACTTTGATGATAAGCCGTGGAAATGCACAGAATGCAATCTCTCGTTCCGACAGAAACGCTATTTAGTTAATCATAAGAAAGTTAATCATAAGTGGAAGACCGAATCTGATCCTGTTATGCAAATATCGACGGCCGAAAGCGAAAGTACAAACGTTGAAGAGGTAGAATACATCCAGTGCGCTCAATGTGATGttgtttttgtaaatatgAAGTACCTTATAGATCATATGAACAGCGAGCATGAAGCTCAAATGCATTATTGCCAGTATTGTAAGCTAGTGTATCATGGTAAAGATAAGGATTTTGAGGTTCACATATCAATGCATGgtggtaattataataaattaaaagatgcCACTGAAGGTGAAACTTTGGAATACACAAACGAAGTGAGAAAAAAAGAcaagaataatgaaaaatcttTGAATCAGGACATTGAAAAGCCTCCGTGTTACACATGCAATTTATGCAAGAGAAATTTCACAAAGAAGTGTGAATTAAAAAAGCACATAAACAGACATTCCGATGTCAACCCGATTCAAAATTCGGATGAAACAGAACTTGTAAATAAAGCAAAACAAATAATCAATGATCGTGTCTCTTACAAATGTGAAACGTGTAAGAAGGTCATATTTACAAAACGGGGATTCCTACGCCATATTCGTGTCCATTTTGATAAACGGCCGTGTAAATGTGATTTATGCGGAAAATCCTATCGTATCGAGCAAGACCTAGCTAGACATATACGAGACGTTCACgaaggattaaaaaaatatgcttGCGACATTTGTGGTCGCGCGTTTGCGAATAAAGGAGCGAAAGATGATCATCGAAGGATTCATACCGGTGAACGTCCATACGCATGCGAACATTGTCCAAAAATGTTTCGAACTCTGAATTCAATTTACATTCACAATCGTGTACATACGGATTATAAACCTCATAAATGTTCATATTGTGGAAAACATTTTAGAAGCAGGCAGAGGTTAACTCATCATGAAACTACACATACAGGTATCAAAGCTTTTGCCTGCGAGATCTGCGGTAAAACGTTTTCCGTCAAAGGTGAAGTTGTACGACATCGTGCGATACATAACGAAGAAAAGCCTTTCGACTGTAAATGCGGCATGAAATTTGGCCAGAAAAGATATCTGAGAAACCATATAAAACAACATCACAAGGAAGCATCTTCGTGGTTGTTAGCAGAATTATTgggaaataataattga
- Protein Sequence
- MAEMMKVMLPSLREIKNQYTCKHCRQIFERKYHLSRHILQCKTGSFTERTTSNAKDVDETEDKDMKSENRKDLRLFQKYKKNKVETYPCIYCDYTVKQKKLLELHLLQSHSEFTRKKDKKLKCADREMVMRAKMEIDGKVYYHCNECGKNLYSPYTFFWHVRIHTGERPYTCHLCGKQFRINQGLARHLRDTHAGIKNFPCDICGRMFSTKRSAEDHKRIHTGERPYICNICGKSFKQKASLFVHNRTHSDVFPFKCNYCDQNFRTRPLLMLHVKKHTGEKPHACDICDRRFRIKYELKRHRLIHFDDKPWKCTECNLSFRQKRYLVNHKKVNHKWKTESDPVMQISTAESESTNVEEVEYIQCAQCDVVFVNMKYLIDHMNSEHEAQMHYCQYCKLVYHGKDKDFEVHISMHGGNYNKLKDATEGETLEYTNEVRKKDKNNEKSLNQDIEKPPCYTCNLCKRNFTKKCELKKHINRHSDVNPIQNSDETELVNKAKQIINDRVSYKCETCKKVIFTKRGFLRHIRVHFDKRPCKCDLCGKSYRIEQDLARHIRDVHEGLKKYACDICGRAFANKGAKDDHRRIHTGERPYACEHCPKMFRTLNSIYIHNRVHTDYKPHKCSYCGKHFRSRQRLTHHETTHTGIKAFACEICGKTFSVKGEVVRHRAIHNEEKPFDCKCGMKFGQKRYLRNHIKQHHKEASSWLLAELLGNNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00223330; iTF_00222663; iTF_00228812; iTF_01417844; iTF_00217887;
- 90% Identity
- iTF_00223330;
- 80% Identity
- -