Tang014591.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tetragonisca angustula
Gene Symbol
-
Assembly
GCA_036937485.2
Location
JAWNGG010000164.1:208601-211493[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.052 5.1 8.2 6.0 1 20 23 42 23 42 0.98
2 18 0.00095 0.092 13.7 0.4 1 23 83 106 83 106 0.93
3 18 0.00022 0.021 15.7 1.7 1 23 138 160 138 160 0.98
4 18 3.5e-05 0.0034 18.2 1.6 1 23 166 189 166 189 0.96
5 18 2.6e-05 0.0025 18.6 0.3 1 23 195 217 195 217 0.98
6 18 5.7e-08 5.5e-06 27.0 1.0 1 23 223 245 223 245 0.99
7 18 3.6e-06 0.00035 21.3 1.5 1 23 251 273 251 273 0.99
8 18 0.00011 0.011 16.6 2.3 1 23 279 301 279 301 0.96
9 18 6.3e-05 0.0061 17.4 0.8 2 23 308 330 307 330 0.96
10 18 0.0031 0.3 12.1 0.1 2 23 362 384 361 384 0.95
11 18 9.3e-07 9.1e-05 23.1 2.8 1 23 454 476 454 476 0.99
12 18 0.00088 0.086 13.8 1.7 1 23 504 526 504 526 0.99
13 18 8.5e-05 0.0083 17.0 0.7 2 23 533 555 532 555 0.94
14 18 0.00029 0.028 15.3 0.0 1 23 561 583 561 583 0.97
15 18 0.00069 0.067 14.1 1.2 1 23 589 611 589 611 0.97
16 18 0.0021 0.2 12.6 9.9 1 23 617 639 617 639 0.97
17 18 1.8e-05 0.0018 19.1 0.0 1 23 645 667 645 667 0.96
18 18 0.0097 0.95 10.5 3.1 5 23 676 694 674 695 0.93

Sequence Information

Coding Sequence
ATGAGAAAAATGGTGAAAGTAATACTACCTCctttaaatgaaattgctACTTCATTGAAAAACCAATACACGTGCAAACACTGTTGTCGAATCTTCGAAGGGAAATACCACTTGACGCGACATATGCCCGAGTGTAAAAGCATGACCGAAAGCTCCACCGAGTGCAGCGCACCGAATGCAGAAGATACAAATAAAGGGGACAAAGATCGAGAAGATTTGAAATGTAGGAGAAACAAACTTGGAACATATCCGTGCATGTACTGCGACTATACGGTCAAGCAAAAGAAACTGCTGGAGTTGCATTTATTGGACTCGCACGCGGAGTTTGCCAGAAAGAAggataaaaagttgaaatgcGCCGACCGAGAAATGGTGATGCGCGCCAAAATGGAAGTCGACGGAAAGATCTATTATCATTGCAACGAGTGCGGCAAGAATCTCTATTCGCCTTACACGTTCTTCTGGCACGTGCGTATACACACCGGCGAACGATCGTACACTTGTCACCTTTGTGGCAAACAGTTTCGCATAAATCAAGGACTGGCGAGACACTTGCGAGACACGCACGCCGGCATAAAGAACTTTCCCTGCGACGTTTGCGGCCGAATGTTCTCGACGAAACGGAGCGCGGAGGAtcacaaacgcatccataccgGCGAACGGCCGTACGTTTGCAACATCTGCGGGAAGTCGTTCAAGCAGAAAGCCTCTCTGTTCGTGCACAATCGCACCCACTCGGACGTGTTCCCCTTTAAATGCAATTACTGCGACCAGAACTTTCGGACGAGGCCGTCGCTCGCGTTACACATAAAGAAACACACCGGCGAGAAACCGCACGCTTGCGACATATGCAGCCGACGTTTCCGCATAAAATACGAGCTGAAACGTCATCGTTTGATTCATTTCGACGATAAACCATGGCAGTGCGCAGAGTGCAACCTCTCGTTCCGACAGAAGCGCTATTTAGTTAATCATAGGAAGGTGAATCACAATCCGCGGTGGAAGGTCGAGTCTGACACCATTATGCAAATATCGACGGTCGAAAGCGAGAGTACGACGAACGTCGAGGAGGTAGAGTACATCCAATGTGCTCAATGCGACGTTGTCTTCGTGAACATGAAGTACTTCATTGATCACATGAACAACGAGCACGAGGCTCAAATGCACTATTGTCAGTATTGCAAACTGGTGTATCATGGTCAAGATAAGGATTTCGAAGATCACGTGTCGATGCATGATAGCAATTGCAAAGTAAAAGGCATCGCCGAGGATGAAAGTGTGGGATGCACGAACGagacgagaaaagaagagaaagatgaTAAAAGATCGTTCGATCAGCAGATTGACAAGCCTCTGTGTTACACTTGCAACTTGTGCgagagaaatttcacaaaaaagtCGGAATTGAAGAAGCACATAAACAGACACTCGGATGTGAATCCTATCGAGAATCCAGATGAGACAGAACTTGTTAATAAAGCGAAGCAAATGATCAACGATCGTGTTTCATACAAGTGCGATACGTGTAAGAAGATCATATTCACAAAACGGGGATTTCTACGCCATATTCGTGTGCACTCTGACAAACGACCGTGCAAATGCGACCTATGTGGAAAATCGTATCGTATCGAGCAGGATTTAGCTAGACACATACGAGACGTTCACGAGGGATTGAAGAAATACGCCTGCGACATCTGCGGCCGGGCATTTGCGAACAAAGGAGCGAAAGACGATCATCGGAGGATTCACACCGGTGAACGGCCGTACGCGTGCGAGCACTGTCCAAAAATGTTTCGGACTCTGAATTCTATTTACATTCACAATCGCGTGCACACGGATTATAAACCTCATAAATGCACGTACTGCGGGAAACATTTCAGAAGCAGGCAGAGGCTGACTCATCATGAAACTACGCATACAGGTATCAAAGCTTTTGCCTGTGAAATCTGTGGTAAAACGTTCTCTGTCAAAGGGGAAGTCGTGCGACATCGCGCGATACATAACGAAGAGAAACCTTTCGACTGTAAATGTGGAATGAAATTCGGTCAGAAGAGATACCTGAGAAATCATATAAAACAACATCATAAGGAAGCATCCTCGTGGTTATTAGCAGAATTATTGGGAAGTAGTAATTGA
Protein Sequence
MRKMVKVILPPLNEIATSLKNQYTCKHCCRIFEGKYHLTRHMPECKSMTESSTECSAPNAEDTNKGDKDREDLKCRRNKLGTYPCMYCDYTVKQKKLLELHLLDSHAEFARKKDKKLKCADREMVMRAKMEVDGKIYYHCNECGKNLYSPYTFFWHVRIHTGERSYTCHLCGKQFRINQGLARHLRDTHAGIKNFPCDVCGRMFSTKRSAEDHKRIHTGERPYVCNICGKSFKQKASLFVHNRTHSDVFPFKCNYCDQNFRTRPSLALHIKKHTGEKPHACDICSRRFRIKYELKRHRLIHFDDKPWQCAECNLSFRQKRYLVNHRKVNHNPRWKVESDTIMQISTVESESTTNVEEVEYIQCAQCDVVFVNMKYFIDHMNNEHEAQMHYCQYCKLVYHGQDKDFEDHVSMHDSNCKVKGIAEDESVGCTNETRKEEKDDKRSFDQQIDKPLCYTCNLCERNFTKKSELKKHINRHSDVNPIENPDETELVNKAKQMINDRVSYKCDTCKKIIFTKRGFLRHIRVHSDKRPCKCDLCGKSYRIEQDLARHIRDVHEGLKKYACDICGRAFANKGAKDDHRRIHTGERPYACEHCPKMFRTLNSIYIHNRVHTDYKPHKCTYCGKHFRSRQRLTHHETTHTGIKAFACEICGKTFSVKGEVVRHRAIHNEEKPFDCKCGMKFGQKRYLRNHIKQHHKEASSWLLAELLGSSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00218564;
90% Identity
-
80% Identity
-