Bson014232.1
Basic Information
- Insect
- Bombus sonorus
- Gene Symbol
- ECU06_1150
- Assembly
- GCA_029958995.1
- Location
- JARWAU010000014.1:6255964-6259041[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.7e-05 0.0052 17.7 3.6 1 21 19 39 19 40 0.95 2 18 0.013 1.5 10.0 0.4 1 23 87 110 87 110 0.92 3 18 0.00021 0.023 15.7 1.7 1 23 142 164 142 164 0.98 4 18 3.4e-05 0.0038 18.2 1.6 1 23 170 193 170 193 0.96 5 18 1.4e-05 0.0016 19.4 0.3 1 23 199 221 199 221 0.98 6 18 9.9e-08 1.1e-05 26.2 1.0 1 23 227 249 227 249 0.98 7 18 4.5e-05 0.0049 17.8 3.4 1 23 255 277 255 277 0.98 8 18 2.2e-05 0.0024 18.8 1.9 1 23 283 305 283 305 0.96 9 18 4.9e-05 0.0054 17.7 1.4 2 23 312 334 311 334 0.96 10 18 0.00034 0.037 15.0 0.1 2 23 363 385 362 385 0.96 11 18 6.4e-05 0.0071 17.3 6.4 1 23 456 478 456 478 0.99 12 18 0.00083 0.091 13.8 1.7 1 23 506 528 506 528 0.99 13 18 8.2e-05 0.0091 17.0 0.7 2 23 535 557 534 557 0.94 14 18 0.00028 0.031 15.3 0.0 1 23 563 585 563 585 0.97 15 18 0.00066 0.073 14.1 1.2 1 23 591 613 591 613 0.97 16 18 0.0021 0.24 12.5 9.7 1 23 619 641 619 641 0.97 17 18 1.8e-05 0.002 19.1 0.0 1 23 647 669 647 669 0.96 18 18 0.013 1.5 10.0 3.6 5 23 678 696 676 697 0.93
Sequence Information
- Coding Sequence
- ATGGCAGAAATGGTGAAAGTAATGCTACCTTCTTTGagagaaatgaaaaatcaaTATACGTGCAAACACTGTCGAcgaatttttgaaagaaaataccACTTATCCCGACATATACTCCAATGTAAAAGTGGCAGTTTCACTGAACGCACTATATCAAATGCGAAAGATGTAGATGAAACAGAAGATAAAGATATGAAAAACGAAAATCGAAAAGATCTAAGattgtttcaaaaatataaaaaaaataaagttgaAACGTATCCATGCATATATTGCGATTATACAGTCAAACAAAAAAAATTGCTCGAACTACATTTGTTGCAATCGCATTCAGAGTTTACCAGAAAGAAGgacaaaaaattaaaatgtgCCGATCGAGAAATGGTTATGCGCGCCAAAATGGAAATCGATGGGAAAGTTTATTATCATTGTAACGAATGTGGTAAAAATCTTTATTCGCCGTATACGTTCTTCTGGCATGTGCGTATACATACTGGAGAACGACCATATACTTGTCATCTTTGTGGCAAACAGTTTCGTATAAATCAAGGACTAGCGAGACATTTACGAGATACGCATGCAGGCATAAAAAATTTTCCATGTGACATATGCGGTCGAATGTTTTCGACAAAACGTAGCGCGGAAGATCATAAACGTATACATACTGGTGAACGAccatatatttgtaatatttgtgGAAAATCATTCAAGCAAAAAGCTTCTCTATTTGTACATAATCGCACTCATTCAGATGTGTTTCCTTTCAAATGTAACCATTGCGATCAGAACTTTCGAACGAGACCATTACTCATGTTGCATGTAAAGAAACATACAGGTGAAAAGCCACACGCATGCGACATATGCGATCGACGGTTCCGCATAAAATACGAGCTAAAGCGTCATCGTTTGATTCACTTTGATGATAAACCGTGGCAATGCACAGAGTGCAATCTCTCGTTCCGACAGAAACGCTATTTAGTTAATCATAAGAAAGTTAATCATAAGTGGAAGACCGAATCTGATCCTGTTACGCAAATATCGACGGCCGAAAGCGAAAGTACAAACGTTGAAGAGGTAGAATACATCCAGTGCGCTCAATGTGATATTGTTTTCGTAAATATGAAGTACCTTATAGATCATATGAACAGCGAGCATGGAGCTCAAATGCATTATTGTCAGTATTGTAAGCTAATGTATCATGGTAAAGATAAGGATTTTGAGGTTCACATATCAATGCATGgtagtaattataataaattaaaagatgccACAGAAGGTGAAACTTTGGAATGCACAAACGAggtgaaaaaaaaagacaagaataatgaaaaatcttttaatCAGGACATTGAAAAGCCTTCGTGTTACACTTGCAACTTATGTAAGAgaaatttcacaaagaagtgTGAATTAAAAAAGCACATAAACAGACATTCCGATGTCAACCCGATTCAAAATTCAGATGAGACAGAACTTGTAAATAAAGCAAAACAAATAATTAATGATCGTGTCTCTTACAAATGTGAAACGTGTAAAAAGATCATATTTACAAAACGGGGATTCCTACGCCATATTCGTGTCCATTTTGATAAACGGCCATGTAAATGTGATTTATGCGGAAAGTCCTATCGTATCGAACAAGACCTAGCTAGACATATACGAGACGTTCACGAAGGATTAAAAAAATATGCTTGCGACATTTGTGGTCGCGCGTTTGCGAATAAAGGAGCGAAAGATGATCATCGAAGGATTCATACCGGTGAACGTCCATACGCATGCGAACATTGTCCAAAAATGTTTCGAACTCTGAATTCAATTTACATTCACAATCGTGTACATACGGATTATAAACCTCATAAATGTTCATATTGTGGAAAACATTTTAGAAGTAGGCAGAGGTTAACTCATCATGAAACTACACATACAGGTATCAAAGCTTTTGCCTGCGAAATCTGCGGTAAAACGTTTTCCGTAAAAGGAGAAGTTGTACGACATCGTGCGATACATAACGAAGAAAAACCTTTCAACTGTAAATGCGGCATGAAATTTGGCCAGAAAAGATATCTGAGAAACCATATAAAACAACATCACAAGGAAGCATCTTCGTGGTTGTTAGCGGAATTATTGGGAAATAATAATTGA
- Protein Sequence
- MAEMVKVMLPSLREMKNQYTCKHCRRIFERKYHLSRHILQCKSGSFTERTISNAKDVDETEDKDMKNENRKDLRLFQKYKKNKVETYPCIYCDYTVKQKKLLELHLLQSHSEFTRKKDKKLKCADREMVMRAKMEIDGKVYYHCNECGKNLYSPYTFFWHVRIHTGERPYTCHLCGKQFRINQGLARHLRDTHAGIKNFPCDICGRMFSTKRSAEDHKRIHTGERPYICNICGKSFKQKASLFVHNRTHSDVFPFKCNHCDQNFRTRPLLMLHVKKHTGEKPHACDICDRRFRIKYELKRHRLIHFDDKPWQCTECNLSFRQKRYLVNHKKVNHKWKTESDPVTQISTAESESTNVEEVEYIQCAQCDIVFVNMKYLIDHMNSEHGAQMHYCQYCKLMYHGKDKDFEVHISMHGSNYNKLKDATEGETLECTNEVKKKDKNNEKSFNQDIEKPSCYTCNLCKRNFTKKCELKKHINRHSDVNPIQNSDETELVNKAKQIINDRVSYKCETCKKIIFTKRGFLRHIRVHFDKRPCKCDLCGKSYRIEQDLARHIRDVHEGLKKYACDICGRAFANKGAKDDHRRIHTGERPYACEHCPKMFRTLNSIYIHNRVHTDYKPHKCSYCGKHFRSRQRLTHHETTHTGIKAFACEICGKTFSVKGEVVRHRAIHNEEKPFNCKCGMKFGQKRYLRNHIKQHHKEASSWLLAELLGNNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00218564;
- 90% Identity
- iTF_00223330;
- 80% Identity
- -