Basic Information

Insect: Bombus consobrinus
Gene Symbol: -
Assembly: GCA_014737455.1
Location: JACXIU010000036.1:5136987-5141822[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0011 0.087 13.2 0.2 1 23 237 260 237 260 0.95

2 9 4e-06 0.00032 20.9 2.3 1 23 265 287 265 287 0.99

3 9 7.6e-07 6.1e-05 23.1 0.6 1 23 293 315 293 315 0.98

4 9 0.0037 0.3 11.5 0.8 3 23 323 344 321 344 0.93

5 9 1.4e-05 0.0011 19.1 1.1 1 23 350 372 350 372 0.93

6 9 6.4e-06 0.00052 20.2 1.1 1 23 378 400 378 400 0.98

7 9 0.00086 0.069 13.5 5.3 1 23 406 428 406 428 0.96

8 9 8.2e-08 6.6e-06 26.2 0.8 1 23 434 456 434 456 0.98

9 9 0.002 0.16 12.4 1.3 2 23 465 486 464 486 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0011	0.087	13.2	0.2	1	23	237	260	237	260	0.95
2	9	4e-06	0.00032	20.9	2.3	1	23	265	287	265	287	0.99
3	9	7.6e-07	6.1e-05	23.1	0.6	1	23	293	315	293	315	0.98
4	9	0.0037	0.3	11.5	0.8	3	23	323	344	321	344	0.93
5	9	1.4e-05	0.0011	19.1	1.1	1	23	350	372	350	372	0.93
6	9	6.4e-06	0.00052	20.2	1.1	1	23	378	400	378	400	0.98
7	9	0.00086	0.069	13.5	5.3	1	23	406	428	406	428	0.96
8	9	8.2e-08	6.6e-06	26.2	0.8	1	23	434	456	434	456	0.98
9	9	0.002	0.16	12.4	1.3	2	23	465	486	464	486	0.96

Sequence Information

Coding Sequence: ATGGAGAACAGGCCGGCGCCGCTCAGGTCCAGGCGGGTCTGTCGATTTTGCCTTACCGAGACTGAACCACTTTCTTTTATCTATGAAAGAGATCATAGTAAACCATTTCAAGTACCACTTACACTGCAGATCATGTCGTGCGTCGCCATCGAGGTGTATGCAGCTGACGGAATGCCACAAATGATATGCAGTATGTGTCGTTGGAATTTGGACAGATCTTATAAATTTAAGCTTCAGTGCAAAAAAGCAGATGAAGCGTTGAGAGCTTATCCATTGTCTGGTGTCTTACCAAGACCATTTCCGCCGATTCCAAATGATCCTCCTGATATGAACAATAAACGACCTTTGGAGCAGAGATCTCAAAACGACGGAAATAAAAAGCCTCGAGTTGATAGCTGTGACAGGGAGAGACGAGAAACACGAGAAAGAGATAGAGAAAGGGAAAGGGATAGGGATCGAGAAAGGGAAAGAGAAAGGGAGAAAGAAAGAGAAAGAGATAGGGAACGTGAAAGGGATAGGGACCGTGACAGAGAAAGGGAAAGAGAAAGAGATAGGGAACGTGAAAGAGACAGGCAAGTAGAAAAACAAAGAGACAAAGAAGAACAACATGATTTTTATGAGGAGGAACAGGATGCTGGCAGTGAAGGAGATCAAGATACAAATAGTACTAAAGAGGAGCGAAAATTAGAGCCAGGTGAGATAAGAGTACATGCATGTGATCAATGTGATCGTACTTTTCCACTACGACAGGCTCTTGCTTTGCACATTCAACGAGCTCATCGTGATCGTAATTATAAATGTACAGAATGTGATCGTATGTTCTTCTCTAAATATGATCTTGGGAAACATATGACTACGCATTCAGAAGAGAAACCATTCTCTTGCCCGATATGTAACAAACAATTTTCAAGGGCAAATTTGTTACAACGTCATGAAAAAGTTCATAGAGATGAATTGCGTTATGGTTGTCAGCATTGCGATCGCGAATTCTTTACAACCGAAGAATTAGAAAAGCATGAGGATTCTGTACATAAAAAGGAAAAACCTTTCCAATGTAACATTTGCAATAAACGTTTCACGTACAAACAGGGTTTAGAACGTCATGAGGTACTACATAACGAAGATAAGACTTTTGTTTGCGAATATTGTAAGGAAGCGTTCCGTACAAGTACGAAGCTAGCTCGTCATTTAACGACGCATGCTGGACATCGACCATATTTATGTAAACTATGCCCTCGTTCATTCCTTCTATCTCATCATTTAACTAGACATATGCGAACACATTCTGTAGAAAAACGCCATGTTTGCGAAGATTGCGGTAAAGCATTCAAGCGTAAAGAGAGTTTGGAGGTACATCAGTTAACGCACACAAAACGCACAGGTATGGGATTGACATGTGATGTCTGCCAGGAATCATGCAGAAATAGGGCCGATTATGTCACACATATAAAACAACATATTGAAGCAGGTGAAAAAATGGGACCGGATGGATTACAGCCAGACAATAAAACTAAACTTGATTTGGATTCTGACGAAGATGAAGAAGAAGAACAATATTCAGATGGAGATGATGATTACGAGCCACCAGCATATATTGTGAAAAAGCTTCCAAAACCAGTTAAGCCATCGGAAAGCGAAGAGGAGCAAGAAAGATCGGAAAAGGAGGAAAATCAGAAAGAACAAGTTGTATATGTAAGACATAAAGATGGAAATATGATTAAAAAGACAATTAAAACTCTGATGCCTATTCAGCGCAGAGAGGTACAAGATAGCAAGATAAAACAAAGTTCAACTACCAACCAATCTCAATCAGCTACAAAACCTTCACAGTCTAAACAAAATGAAGACCCTTCAAAGTCTTCCCGTATTGATGAAACGGAAGCACAAGTTCAAAAAATTGTTGCATCTGTGTTTAAGGAGCATAAGATACCTCTGAAACATCAAAATGTTCAAGAACAAAATAAAGAACCATCTACACCTACGAATCAATTAAGACCTCAACAAGGACAAAGTAGTTCACAAAATCAAATTTCTACAAAAGACGAAAAATCTGAAATTCCTATAGCGGTCAGTAATACACCAAAAGCTGTAAACACTGTTAAAGTAATAAAGAGAATCGTTGTGAGAAAACCAGGTAATACTGAGACTAGTACATCTACAGTAAAAGATGAAGATGCAACAGGTAGTACTTCTCAAACATCTAGTACAGGTCACAAAGTAACGAAAAGAGTAATTGTTCGTAGAATTATTCGTCAGGGAGATACTACCCGAGAAGTTATTATGAATCCTGATGGTACGATAATCGATCCAGCAGAATTAGCAAAGTTACCAACTGGTAATGTTGTAAAGAGAGTTGTCGTAAAGAAGCCACTTGATAAACACCAAAGTTTGGTTCAAGCGGTGTTGCAGTCAACTACGGATATTCGACAACCAACTACTACAATAAAAAATAACGATACGGTACTAAGCGAATCTCCGAAATTTGAATTAAAAACATCTCAATCCATAAATGCATCATCTTCGGTAACAAAAACAACTGTATGTCCTACATCGAAACCTGCATTAACAGTAGGAGATCAAGAAACAAAAGAAAAATTAGAACAGTTGGAAAAGAGAGTCGAACAACAGCGCTTGAAGATTGAAGAATTAGAGGCTCGTAAGCAACAAGAATATGAACCCATTGAAGAAATGTCTCCTGAACGTCACGACGAATCCGACGATGAACAGCAATTACCATTAAAAAGAGTGTTTGTAAAGAAAAAGCAAAGTATGTATGACGAAGAACAAGAATATAATGACAATGATGTAGCAATAACTTCTGTAGCAACCTCTGTAACAACTTCAGCAACGACCCCAATAACAACAATAAAAATAGATGATGTTGAGCCAGATACTGAACCAGAAAAGGAGAAAGAAGAAAGTAAATCTGAGGTAGAAGTAGAAAATATATCAAAGGACATTACGGTAACGCCGAAACTAGCTACTACAACAGTTGTACCAATACCAACAACGACAGCAGCAGTAGCAATACCAGTAATGACAACAGCCATAGCAATACCAACAACTGTTAACACTAGAAGAGAAAGTAAACCATTGATAACCAGTTCCAAAGTCTATGGAAATAAAAAGATTATTGTTATAAAAACAGAAGAAACATCGGAAGTGGAAGAAATGAGTCGGGAATTGTGTAGTATATTAGATTCAGCTGATTCTGTAGTCAAGATGCAAGAAACAGTTTTAAGTAACCTCACTCAAATATCTTCTATCGGAGAATGTTCTCAGAAGAACTATAATGATAAACCAACAGCTGGCCCATCTATCTCCGAGGATTATTCAGAGAAAGAAGAGGCTGCTGTTGAAACTACTTCTCAGGATCAAGAAGTAGATATTAAGAATGTTGTACCCATGGATGTGTCTGATTCCCAAGAATCTGATATTAAAATGGAGCCGGTATCTCAAGAACAAGATATGGAACAACCCGAACAAAATTCAAATTTGACTTTAGACGAACAAGATCTTTCAGAATCGACAGATATATTTGAACCGTCGGATAATGTGTTAGAGGTACAAAAGAGTCAAATGGACGATTCTGTAATAGAACTCGAACATGGAAGTCACGCAATCAGTTTAAATGACACCAATGACAGTCAAGATAGTCTCGAAGATAAACTTCAACAAATGGAAGGTTGA
Protein Sequence: MENRPAPLRSRRVCRFCLTETEPLSFIYERDHSKPFQVPLTLQIMSCVAIEVYAADGMPQMICSMCRWNLDRSYKFKLQCKKADEALRAYPLSGVLPRPFPPIPNDPPDMNNKRPLEQRSQNDGNKKPRVDSCDRERRETRERDRERERDRDREREREREKERERDRERERDRDRDRERERERDRERERDRQVEKQRDKEEQHDFYEEEQDAGSEGDQDTNSTKEERKLEPGEIRVHACDQCDRTFPLRQALALHIQRAHRDRNYKCTECDRMFFSKYDLGKHMTTHSEEKPFSCPICNKQFSRANLLQRHEKVHRDELRYGCQHCDREFFTTEELEKHEDSVHKKEKPFQCNICNKRFTYKQGLERHEVLHNEDKTFVCEYCKEAFRTSTKLARHLTTHAGHRPYLCKLCPRSFLLSHHLTRHMRTHSVEKRHVCEDCGKAFKRKESLEVHQLTHTKRTGMGLTCDVCQESCRNRADYVTHIKQHIEAGEKMGPDGLQPDNKTKLDLDSDEDEEEEQYSDGDDDYEPPAYIVKKLPKPVKPSESEEEQERSEKEENQKEQVVYVRHKDGNMIKKTIKTLMPIQRREVQDSKIKQSSTTNQSQSATKPSQSKQNEDPSKSSRIDETEAQVQKIVASVFKEHKIPLKHQNVQEQNKEPSTPTNQLRPQQGQSSSQNQISTKDEKSEIPIAVSNTPKAVNTVKVIKRIVVRKPGNTETSTSTVKDEDATGSTSQTSSTGHKVTKRVIVRRIIRQGDTTREVIMNPDGTIIDPAELAKLPTGNVVKRVVVKKPLDKHQSLVQAVLQSTTDIRQPTTTIKNNDTVLSESPKFELKTSQSINASSSVTKTTVCPTSKPALTVGDQETKEKLEQLEKRVEQQRLKIEELEARKQQEYEPIEEMSPERHDESDDEQQLPLKRVFVKKKQSMYDEEQEYNDNDVAITSVATSVTTSATTPITTIKIDDVEPDTEPEKEKEESKSEVEVENISKDITVTPKLATTTVVPIPTTTAAVAIPVMTTAIAIPTTVNTRRESKPLITSSKVYGNKKIIVIKTEETSEVEEMSRELCSILDSADSVVKMQETVLSNLTQISSIGECSQKNYNDKPTAGPSISEDYSEKEEAAVETTSQDQEVDIKNVVPMDVSDSQESDIKMEPVSQEQDMEQPEQNSNLTLDEQDLSESTDIFEPSDNVLEVQKSQMDDSVIELEHGSHAISLNDTNDSQDSLEDKLQQMEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141374;
90% Identity: iTF_00228149;
80% Identity: -