Basic Information

Insect: Boloria selene
Gene Symbol: -
Assembly: GCA_905231865.2
Location: HG993149.1:11456682-11457356[-]

Transcription Factor Domain

TF Family: HMG
Domain: HMG_box domain
PFAM: PF00505
TF Group: Other Alpha-Helix Group
Description: High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4e-26 4.5e-23 82.1 0.3 5 69 1 65 1 65 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4e-26	4.5e-23	82.1	0.3	5	69	1	65	1	65	0.99

Sequence Information

Coding Sequence: ATGAATGCTTTCATGGTTTGGTCGCAGATTGAGCGTAGAAAAATTTGCGAGCAAACACCTGATATGCATAATGCAGAAATATCCAAAAATTTAGGCCGCGTATGGAAAACTTTGAACGATGAAGAGCGACAACCGTTCATAGATGAAGCGGAAAGGCTCAGGCAGCTACATATGCGCGAGTATCCCGACTACAAGTACCGGCCCCGCAAGAAGACAGCTAAACCAGCCCAGAGAAGCGGTGCAGTTACGAAACAGAAACGTAAGCAACGTGCAGACAGCAATAACAACAGAGGTGTGTCAAGACGGCGAACGCGGCCAGTTCCGACAGTCCCGAGCGTCCCCATCGAGACACCTGCTCCTCCCCCACTGCCAGCATCACCAGCGGGGGCGCCTGACTCTCCCGAGTCTGCTTGCTTCTTCGACGATAGCACGCGACGTGAGCAGACTGACCTAACAGATCTTTACTCCATAACTGATCTGCTGCCCTTACCCGCGGACTGCGAGGTCGATTTAGACGCATTGACTGACATGGAGTCCTTCGAGACGGCGTCCTCCTCTTCCGGATCGCATTTTGAATTCTCATGCACACCGGACGTGTCCGACATGCTAAGTGAAATCGGCGTGGCGGGTGATTGGGATGATCACACGTTTTCGTCGTACCTAACGTCGTCTTAA
Protein Sequence: MNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERQPFIDEAERLRQLHMREYPDYKYRPRKKTAKPAQRSGAVTKQKRKQRADSNNNRGVSRRRTRPVPTVPSVPIETPAPPPLPASPAGAPDSPESACFFDDSTRREQTDLTDLYSITDLLPLPADCEVDLDALTDMESFETASSSSGSHFEFSCTPDVSDMLSEIGVAGDWDDHTFSSYLTSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01124577; iTF_01071618; iTF_00007075; iTF_01416772; iTF_01251725; iTF_01125454; iTF_01083318; iTF_01415831; iTF_00942809; iTF_01280282; iTF_00022785; iTF_00621218; iTF_00212451; iTF_00248068; iTF_00247177; iTF_00723051; iTF_00159826; iTF_00408451; iTF_00074500; iTF_00347460; iTF_00457220; iTF_00794597; iTF_00382598; iTF_00284528; iTF_00448123; iTF_00034718; iTF_00035648; iTF_01180294; iTF_01425922; iTF_00621988; iTF_01073604; iTF_01179475; iTF_01193574; iTF_01561991; iTF_01206538; iTF_01204876; iTF_00710190; iTF_00358546; iTF_00114931; iTF_00357491; iTF_00430643; iTF_01202452; iTF_00276406; iTF_00878840; iTF_01205689; iTF_01203226; iTF_01204026; iTF_00711003; iTF_00771072; iTF_00353063; iTF_00290696; iTF_00235842; iTF_00820072; iTF_01429926; iTF_00429000; iTF_00428112; iTF_00819155; iTF_00075531; iTF_00076522; iTF_00150539; iTF_01081579; iTF_01279243; iTF_01282275; iTF_01153966; iTF_01091919; iTF_01181876; iTF_00960917; iTF_01018549; iTF_00458038; iTF_01017719; iTF_01333815; iTF_00354073; iTF_00787642; iTF_01020283; iTF_00006270; iTF_00752062; iTF_01503870; iTF_01502966; iTF_00642306; iTF_00468163; iTF_00715779; iTF_01564643; iTF_00695588; iTF_00782628; iTF_00775239; iTF_00777992; iTF_00781009; iTF_00778740; iTF_00781814; iTF_00178149; iTF_01490117; iTF_00405894; iTF_00197351; iTF_00011976; iTF_01220643; iTF_00072805; iTF_00146413; iTF_00013012; iTF_00640311; iTF_01302329; iTF_00720282; iTF_00647981; iTF_00832994; iTF_01281328; iTF_00651734; iTF_00674280; iTF_00994340; iTF_00355146; iTF_01176168; iTF_00709226; iTF_00774475; iTF_00933739; iTF_00925709; iTF_00744625; iTF_00403794; iTF_00687863; iTF_01178552; iTF_00288857; iTF_01248122; iTF_00786780; iTF_00934748; iTF_00164351; iTF_00261855; iTF_01451443; iTF_01453258; iTF_00323500; iTF_00827942; iTF_00055406; iTF_01155182; iTF_01436078; iTF_00869616; iTF_00205105; iTF_01021213; iTF_00420529; iTF_00421345; iTF_00418974; iTF_00419744; iTF_00957937; iTF_01331569; iTF_00180466; iTF_00844338; iTF_01336835; iTF_01501104; iTF_01341266; iTF_01387587; iTF_01386694; iTF_01388458; iTF_01385742; iTF_01208179; iTF_01209260; iTF_00364916; iTF_01547540; iTF_01090763; iTF_01401283; iTF_01222461; iTF_00796502; iTF_01362422; iTF_01367894; iTF_00249688; iTF_01463242; iTF_01337739; iTF_01141655; iTF_00839416; iTF_01042669; iTF_01156440; iTF_01157777; iTF_00887385; iTF_01438917; iTF_00795692; iTF_00025231; iTF_01153011; iTF_00673493; iTF_00166905; iTF_00970394; iTF_01082430; iTF_00971359; iTF_01140186; iTF_01359740; iTF_00288038; iTF_01403420; iTF_00275255; iTF_00027741; iTF_00026840; iTF_00077469; iTF_01158947; iTF_00922862; iTF_00195151; iTF_00195152; iTF_01402705; iTF_01495765; iTF_01494296; iTF_01495034; iTF_01496574; iTF_00681639; iTF_00682418; iTF_00683351; iTF_01334888; iTF_01569322; iTF_00356187; iTF_00279100; iTF_00736608; iTF_00008000; iTF_00806720; iTF_01130014; iTF_00161535; iTF_01544869; iTF_01542953; iTF_01545738; iTF_01546636; iTF_01561106; iTF_01543923; iTF_00162803; iTF_01452309; iTF_00198108; iTF_00840287; iTF_00875295; iTF_00874449; iTF_00876159; iTF_00207904; iTF_00208873; iTF_00855872; iTF_01507200; iTF_00842661; iTF_00256903; iTF_00801836; iTF_00461549; iTF_00144560; iTF_01034578; iTF_01078195; iTF_01508053; iTF_00255894; iTF_00960152; iTF_01033723; iTF_00824732; iTF_00958653; iTF_00277348; iTF_00761668; iTF_01437033; iTF_00723947; iTF_01217485; iTF_01217479; iTF_00204341; iTF_01437974; iTF_00959390;
90% Identity: iTF_01079044;
80% Identity: -