Beup023777.1
Basic Information
- Insect
- Boloria euphrosyne
- Gene Symbol
- -
- Assembly
- GCA_951802675.2
- Location
- OX637895.1:817157-819739[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00031 0.031 15.6 0.8 2 20 119 137 118 139 0.93 2 18 0.82 81 4.8 0.1 3 23 145 165 144 165 0.91 3 18 0.0098 0.97 10.8 1.2 3 23 172 193 171 193 0.94 4 18 7.4e-05 0.0074 17.5 2.4 2 23 199 220 198 220 0.97 5 18 0.00045 0.045 15.0 1.4 1 23 256 279 256 279 0.93 6 18 0.095 9.4 7.7 3.4 1 23 285 307 285 307 0.95 7 18 1.8 1.8e+02 3.7 0.5 1 23 341 364 341 364 0.88 8 18 0.002 0.2 13.0 0.8 3 23 371 392 370 392 0.91 9 18 0.0006 0.06 14.6 1.2 2 21 502 521 501 522 0.94 10 18 0.097 9.6 7.7 0.1 3 23 529 550 528 550 0.97 11 18 0.59 58 5.2 3.5 1 23 555 578 555 578 0.94 12 18 3.4e-05 0.0034 18.6 0.6 2 23 584 605 583 605 0.97 13 18 0.63 63 5.1 1.3 2 21 609 628 609 629 0.91 14 18 1.3e-05 0.0013 19.8 1.4 1 23 655 678 655 678 0.95 15 18 0.00085 0.084 14.2 0.4 1 23 684 706 684 706 0.92 16 18 0.064 6.3 8.3 0.1 1 23 712 734 712 734 0.97 17 18 0.0034 0.34 12.3 0.8 1 23 740 763 740 763 0.94 18 18 9.7e-05 0.0097 17.1 1.5 2 23 770 792 769 792 0.95
Sequence Information
- Coding Sequence
- ATGAAGGCTGATTGGTCCGCGTGGTTTCAGGTGGTGGAAGAAACCGACCTCCCCGCTGGGTTGTGCTGCGCCTGCGCAGATAACGCCATTTCAACGTGGCAGTTCAGGCATTTATGCCGTGAGTCACACAGACACTGGACACAGATTTCCACAGTCCTGATGAGAACAGAAATACCCACCACGAAAGATAAGACCTTCTTCATCAGCACCAATGGCACCCTACTAAGAGACTACATGAATAACATCCGCACTTTGACAGACGCTACCAAAAGATTGAATTTTTTAAACGGAAACGCAAATGAAGTGCGCGcgaaatacaaaaagaaaaagtcGAAAGCAGTTGAGAGTGAATGCAAGTGTAAAGAATGTGGAAAAGAATTTGCATTGCCATATTTTTTGAACCGTCATTTGATAAATACTTCGAAACGCGCTTGTACGTTATGTGGTAAGATTGTGCCTCGGGAAAAGTTAGCGATACATTTACAAAGGGTGCATCGAAAGTTTGTGGAATTTTGCGACGTCTGCTATAAagtttttgatgaaaaaaaCCATTTGGATCGTCACAAAGAAATTTTACATAAGGATAGCTCTTTACAATGCAAAATATGTAAACACGGCTTTAAAAGTGAGAGATCGTTGAACGCCCACATGTACACACATACATTATTCAACTGCTCCTCATGCAACAGTAGctatgaaaacaaaaaatgctatttataCCACAGAAACAATTGTAAAGGTTCAAAGTTTACAATACAAGATGTTTATGAATGTCACGACTGCGGAAGTAAATATACGAAGAAGCCGTCTCTCAGAGTCCACATAGTTCAAAAGCATCTGAACGTGTTGCCATATATCTGCCAAGTTTGTGGGAAACGCAGCTCTTCGAAAACCCACCATCAATCCCACGAATTAGTCCATAAAACTGAAAGGAAGGTATACCAATGTTACTGTGGTGCAAAGATGAGAACGGTTCTTGGTTTTCACATGCACCAAAGGATACATTCGGGAGAAAAGCCATATGAATGTCAGGAATGTGGTGATAGATTTCTATCGGCTTCTAGAAGATTGGATCACATTAAAAGAAGGCATAGAAGTAAATATCACGGTTGCCTTGAGTGTGACGCGAGGTTTGTTAGGCCTTCGGAATTGAAAAAACATTGTCGTTTAGCGCACTTTGTAGAAGAAGACCAATTATTTCCGAGAGGCTTATGTATATCCTGCACTAGTGTGGCTGTATCTGCTTCAGAGTTCAGAATATTTGTGAATAAATCGCAGCAGCTATGGACCAATTGTGTAAATTCTCTCCAAACACTTCCAAGTTTGAACACTTCACACAAATCCCTGTACGCCATCGTTAGAGAGAACTTGCTTTTGCAAACAGTTAATAACTTTGAAGGCAACGCAAAAGACCTAGTAAAGCATCTTACCAATAGAATCGTTAAACGAAAATCGTTAATAGTTGAGAGAAAACCGCGACATCCTCGCACTGGTCCAGCCTGTAGTTGCACAGATTGCGGAAAAAGTTTTCTAAGCCCATATTACTTGAACATGCACTTGCGCAACAGTGGTCAGAAAGAGGCATGTTGGATGTGCGGAGCCATGCTAACCAGAGGTCAAGAGATGAAACAGCATCTGCGCAAAATACACAAAACTGAAATGTTCCTGTGCACAGAATGCCCAATGCTTTTTAAAACTGACGTGGATAGGAAGCGCCACACCAAAAAATGTCACGGCCCAGGTGTTATGACGTGCTCAGATTGTGGTCGGACATTCCAAAGGAGTGCATCCTATGAAGTGCATACCCAAATGCACGCAGTACGGACTTGCAGAGCTTGTGGTGCACAATTCACTAATCGAGGCTGCTACAGAGTGCACAGATCAAAATGCGAGCCAGAAGCTAAACCAGATTTGAAGACGATACCAAGAAACAGGCGTTCAAATATTCGTGACCCAGCAACATTCACATGTGACTATTGCGGCAAGACTTACCATTCCAGACCtcaattaaaaaatcatattttatggaTCCACATGGATATAAGACCTCACCAGTGTCAGTGGTGTGGGAAAAGGTTCTACACTCCAGCCCGGTTAGCAGAACACTCTGTGGTTCACACACGGGTCAGAAATTTTGAATGTGATATCTGTGGTGCAAAATTAGTGTCTAAAATGGCGGCGGTGTATCATAGGAGACGTCACACGGGAGAAAGACCTTATGAGTGTCAGGATTGTGGGGAAAAGTTCATCTCTTCATCGAGAAGATCAGAACATGCTAAACGGAGACACAACAAAGGTTCTCGAATCCACTGTCCAGAGTGTCTCGCAAGCTTCGTAAGAAGTCATGAGTTGAAGAAGCATATGGAGAAAGCCCATGGTGTGGAAAATCATGTGGTAACAATAAAGAAGGAAAAGGGTTTTGATATGCCAACGGCTGTATGA
- Protein Sequence
- MKADWSAWFQVVEETDLPAGLCCACADNAISTWQFRHLCRESHRHWTQISTVLMRTEIPTTKDKTFFISTNGTLLRDYMNNIRTLTDATKRLNFLNGNANEVRAKYKKKKSKAVESECKCKECGKEFALPYFLNRHLINTSKRACTLCGKIVPREKLAIHLQRVHRKFVEFCDVCYKVFDEKNHLDRHKEILHKDSSLQCKICKHGFKSERSLNAHMYTHTLFNCSSCNSSYENKKCYLYHRNNCKGSKFTIQDVYECHDCGSKYTKKPSLRVHIVQKHLNVLPYICQVCGKRSSSKTHHQSHELVHKTERKVYQCYCGAKMRTVLGFHMHQRIHSGEKPYECQECGDRFLSASRRLDHIKRRHRSKYHGCLECDARFVRPSELKKHCRLAHFVEEDQLFPRGLCISCTSVAVSASEFRIFVNKSQQLWTNCVNSLQTLPSLNTSHKSLYAIVRENLLLQTVNNFEGNAKDLVKHLTNRIVKRKSLIVERKPRHPRTGPACSCTDCGKSFLSPYYLNMHLRNSGQKEACWMCGAMLTRGQEMKQHLRKIHKTEMFLCTECPMLFKTDVDRKRHTKKCHGPGVMTCSDCGRTFQRSASYEVHTQMHAVRTCRACGAQFTNRGCYRVHRSKCEPEAKPDLKTIPRNRRSNIRDPATFTCDYCGKTYHSRPQLKNHILWIHMDIRPHQCQWCGKRFYTPARLAEHSVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECQDCGEKFISSSRRSEHAKRRHNKGSRIHCPECLASFVRSHELKKHMEKAHGVENHVVTIKKEKGFDMPTAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00247443; iTF_00248350; iTF_00779713;
- 90% Identity
- iTF_00248350;
- 80% Identity
- -