Hhim009112.1
Basic Information
- Insect
- Heliconius himera
- Gene Symbol
- -
- Assembly
- GCA_013421065.1
- Location
- JAATLT010007829.1:82990-88794[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00045 0.034 14.8 1.4 2 20 171 189 170 191 0.93 2 19 5.9 4.6e+02 1.8 0.1 3 19 197 212 196 217 0.68 3 19 0.11 8.7 7.2 0.4 3 23 224 245 223 245 0.96 4 19 0.00045 0.034 14.8 0.9 2 23 251 272 250 272 0.97 5 19 5.6 4.3e+02 1.9 5.6 1 21 275 295 275 296 0.94 6 19 0.00034 0.026 15.1 0.5 1 23 308 331 308 331 0.93 7 19 0.055 4.3 8.2 3.8 1 23 337 359 337 359 0.95 8 19 6.9 5.3e+02 1.6 1.4 5 23 369 387 367 387 0.93 9 19 1.6 1.2e+02 3.6 0.5 1 23 393 416 393 416 0.88 10 19 0.96 73 4.3 0.1 3 16 423 436 423 437 0.93 11 19 0.00052 0.04 14.6 1.2 2 21 539 558 538 559 0.94 12 19 0.22 17 6.3 2.1 1 23 592 615 592 615 0.96 13 19 0.0003 0.023 15.3 0.4 2 23 621 642 620 642 0.97 14 19 0.21 16 6.4 1.9 2 21 646 665 646 666 0.92 15 19 1.2e-05 0.00088 19.8 1.4 1 23 692 715 692 715 0.95 16 19 0.00073 0.056 14.1 0.4 1 23 721 743 721 743 0.92 17 19 0.055 4.2 8.2 0.1 1 23 749 771 749 771 0.97 18 19 0.00029 0.023 15.3 0.5 1 23 777 800 777 800 0.96 19 19 0.00014 0.011 16.3 1.7 2 23 807 829 806 829 0.95
Sequence Information
- Coding Sequence
- ATGACCCGACAAGTCGATGTAAAGGCTCTAGTTTCGCACATAGTTCGCGGAGACGGCGCAAATAAGTGCCGAATATGTTTAGGAGATACAACGGAAGGACAAGTCTACTTAAGCGATACAGTGATGATGGATGGTGATAAAGCGGTTACTTTATCGGAAATATTGGAAACAATAACTGGAATAAagGTGGTGGACGAAACCGACTTCCCCACGGCGTTGTGCTGCGCGTGCGCATATAACGCCATATCAGCGTGGCAGTTCAGACACCTATGCCATGAGTCGCACAACCATTGGACTAAAATTACCGAGGCCCTGATGATACCAGAAAATCCAACTAAACAAGATAAGGCCTTTTATATAACAAGTAATGGAACTATCTTCAATGATTATGTGGCTGTTAGTCATTCTCGAGAAGATGCTGTCAGAAGACTGAATTTTTTGTCTGGTGCTAAACATAAAATTCGTgcgaaatataaaaagaaatgttcCAAAATGAATGAAAACAAGTGCAAATGCAAGGATTGCGGTAAACAGTTTGAATTACCCTATTTCTTGAATCggcatttaataaattcttcgGTACGCGCTTGCACATTGTGCGGGAAGGTtgtaatgaaagaaaaattgCCGGTACATTTGGAGAGGTCTCACCAGCATTTGGTCGAATTTTGTGATATTTGCTATAAGTTATTTGACGATAGACTTCTTTTGGATCGGCATAAACAGATATTGCATGCAGATAGCAGCTTGCAGTGTAATATCTGTAGAAACGGCTTCAAAAATGATCGATCCCTAAGAGCTCATATGTACACACATACCCTTTTTAACTGTTCTTCGTGCAACAGTAGTTTTGAAAACAGGAAATGTTACTTACACCATAGGAACAACTGTAAAGGATCCAAATGTACAAGTCAAGATATTTACGAATGTAACGACTGTGGTAGCAAATACACTAAAAAACCGTCTTTAAGAGTACACATAGTCCAAAAACATTTAAACGTTCTACCATACATTTGCCAAATTTGTGGAAAACGTAGTTCTTCGAAGACTCACCACAAATCTCACGAATTGGTTCACAAGACTGAAAGAAAGATATATCAGTGCTACTGCGGCGCCAAAATGAGAACAGTCCACGGCTTTCAAATGCATCAGAGGATCCATTCTGGGGAGAAACCATATGAATGTCAGGAATGTGGGGACAGGTTTCTATCGGCTTCCAGAAGGTTGGATCATATAAAGAGGAAGCATAGACGGAAGGATCTTGGCTGCGATGAATGTGACGCAAGGTTTGTGCAAGAGGATCAATTGTTTCCACGAGGCTTGTGCGTGTCCTGCACCAGGGTAGCTGTGTCTGCTTCGGAGTTCCGAGTTTTTGTAACGAAATCACAGCGATTGTGGGCCAACTGTATAGACTCCCTTCACACTCTTCCAACTCTGAATACTTCCCAAAAATCTTTATATGCAATCGTTAGAGAAAACCTGTTGTTACAAACTGTCAATCATTTTGAAGGGAATGCGAAAGATTTGTTAGAACATCTAAGTAATAGAATTGTTAAACGAAAGTCTTTATTAGTGGAACGGAAGCCTAGGCATCCTAGGACGGGACCAGCGTGCAGCTGCACAGATTGTGGCAAGAGCTTTCTTAGTCCATATTACCTAAATATGCATTTACGGAACAGTGGACAGAAGGAAGCTTGCTGGCTCTGTGGCGCCATGTTAACACGAGGGCAAGAAATGAAAGACCATCTATGGAAAATACACAAAACCGAAATGTTTATTTGCTCAGAATGTCCATTGCTGTTTAAAACAGATGTGGACAGAAAGCGTCATGCTAAAAAGTGTCATGGGCCTGGTGTCATGACGTGCGCAGATTGTGGCAGAACATTCCAGAGGAGTGCATCTTTCGATGTGCATACACAAATGCACACAGTGCGTACATGTAGATCCTGTGGCGCACAGTTTACTAATCGTGGCTGTTACAGAGCGCACAGATCCAAGTGTGAACCTGACGCTAAACCAGATTTAAAGACGATACCAAGAAACAGACGTTCAAATATCCGTGACCCGGCAACTTTCACTTGTGACTATTGTGGCAAGACCTACCATTCGCGTCcgcaattaaaaaatcatattctatGGATTCACATGGATATACGACCCCATCAGTGTCAGTGGTGTGGAAAAAGGTTTTATACACCAGCCCGTTTGGCTGAACACTCAGTAGTACATACTAGAGTGAGGAATTTTGAATGTGATATCTGTGGTGCCAAGTTAGTGTCGAAAATGGCAGCGGTGTACCACAGGAGGCGGCACACAGGTGAAAGACCATACGAATGCCCAGATTGTGGAGAAAAGTTTATATCTTCATCTCGTAGAACGGAACATGCCAAGCGAAGACATAATAAAGGTTCCCGTATCCATTGCCCGGAATGTCTGGCGAGTTTTGTGAGAAAtcatgaattaaaaaaacatatggacAAAGTTCATAATAATGAAAATCATGTTGTTGTCAAAATAAAGAAGGAAAACAAAGAGTTTCATATAAAGGCTGTATGA
- Protein Sequence
- MTRQVDVKALVSHIVRGDGANKCRICLGDTTEGQVYLSDTVMMDGDKAVTLSEILETITGIKVVDETDFPTALCCACAYNAISAWQFRHLCHESHNHWTKITEALMIPENPTKQDKAFYITSNGTIFNDYVAVSHSREDAVRRLNFLSGAKHKIRAKYKKKCSKMNENKCKCKDCGKQFELPYFLNRHLINSSVRACTLCGKVVMKEKLPVHLERSHQHLVEFCDICYKLFDDRLLLDRHKQILHADSSLQCNICRNGFKNDRSLRAHMYTHTLFNCSSCNSSFENRKCYLHHRNNCKGSKCTSQDIYECNDCGSKYTKKPSLRVHIVQKHLNVLPYICQICGKRSSSKTHHKSHELVHKTERKIYQCYCGAKMRTVHGFQMHQRIHSGEKPYECQECGDRFLSASRRLDHIKRKHRRKDLGCDECDARFVQEDQLFPRGLCVSCTRVAVSASEFRVFVTKSQRLWANCIDSLHTLPTLNTSQKSLYAIVRENLLLQTVNHFEGNAKDLLEHLSNRIVKRKSLLVERKPRHPRTGPACSCTDCGKSFLSPYYLNMHLRNSGQKEACWLCGAMLTRGQEMKDHLWKIHKTEMFICSECPLLFKTDVDRKRHAKKCHGPGVMTCADCGRTFQRSASFDVHTQMHTVRTCRSCGAQFTNRGCYRAHRSKCEPDAKPDLKTIPRNRRSNIRDPATFTCDYCGKTYHSRPQLKNHILWIHMDIRPHQCQWCGKRFYTPARLAEHSVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECPDCGEKFISSSRRTEHAKRRHNKGSRIHCPECLASFVRNHELKKHMDKVHNNENHVVVKIKKENKEFHIKAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00212824;
- 90% Identity
- -
- 80% Identity
- -