Bdap022576.1
Basic Information
- Insect
- Brenthis daphne
- Gene Symbol
- -
- Assembly
- GCA_947093115.1
- Location
- OX352471.1:45506223-45508805[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00022 0.016 16.0 0.3 1 20 117 136 117 138 0.95 2 18 0.13 10 7.2 0.2 3 23 144 164 143 164 0.95 3 18 0.0027 0.21 12.5 1.2 3 23 171 192 170 192 0.94 4 18 7.8e-05 0.006 17.4 0.7 2 23 198 219 197 219 0.97 5 18 0.00011 0.0082 16.9 1.3 1 23 255 278 255 278 0.93 6 18 0.052 4 8.5 3.4 1 23 284 306 284 306 0.95 7 18 1.9 1.5e+02 3.5 0.6 1 23 340 363 340 363 0.87 8 18 0.0021 0.16 12.9 0.8 3 23 370 391 369 391 0.91 9 18 0.00057 0.044 14.6 1.2 2 21 501 520 500 521 0.94 10 18 3.6 2.8e+02 2.7 0.2 3 23 528 549 527 549 0.94 11 18 0.56 43 5.2 3.5 1 23 554 577 554 577 0.94 12 18 0.00018 0.014 16.2 0.6 2 23 583 604 582 604 0.97 13 18 0.6 46 5.1 1.3 2 21 608 627 608 628 0.91 14 18 1.3e-05 0.00098 19.8 1.4 1 23 654 677 654 677 0.95 15 18 0.00081 0.062 14.2 0.4 1 23 683 705 683 705 0.92 16 18 0.061 4.6 8.3 0.1 1 23 711 733 711 733 0.97 17 18 0.0033 0.25 12.3 0.8 1 23 739 762 739 762 0.94 18 18 0.00016 0.012 16.4 1.9 2 23 769 791 768 791 0.95
Sequence Information
- Coding Sequence
- ATGAAGGCTGATTGGTCCGCGTGGTTTCAGGTGGTGGAAGAAACCGACCTTCCCGCTGGGTTGTGCTGCGTCTGCGCAGATAACGCTATTTCTACGTGGCAGTTCAGGCATTTATGCCATGAATCGCACAGACATTGGACACAGATATCCACAGTCCTGATGATAACAGATATACCCACCACAAAAGACAAGACCTTTTATATCAGCACCAGTGGTACCTTACTAAAAGACATGAACAACATCCGTACTTTGACGAACGCTACAAAGAGATTGAATTTTTTAATCGGAAATACAAATAAAGTGCGCGCGAAATACAAAAAGAAAAAGTCGAAAGTAGCTGAGTGTAAATTTAAGTGTAGAGATTGTGGGAAAGAATTTGAATTGCCATATTTTTTGAATCGTCATTTGATTAATTCATCGAAACGCGCTTGTACGTTTTGTGGCAAAATTGTGTCTCGAGAAAAGTTAGCGGTACATTTGCAAAGGCTGCATCAACGATTTGTGGAATTTTGTAACGTGTGCTATAAAGTTTTTGATGAGAAAGACCATTTGGATCGTCACAAAGAAATTTTACATGGGGATAGTTGTTTGCAATGCAAAATATGTAAACTCGGCTTTAAAAGTGAGAGATCTTTAAGCGCTCACATGTACACACATACATTATTCAACTGTTCCTCGTGTAACAGTAGCTTTGAAAACCGAAAATGCTATTTATACCATAGACACAATTGTAAAGGTTCTAAGTTTACAAAACAAGATGTTTATGAATGTCACGATTGCGGAAGTAAATATACAAGGAAACCGTCTCTGAGAGTCCACATAGTGCAAAAGCATTTAAATGTATTGCCATATATCTGCCAAATTTGCGGGAAACGTAGCTCTTCAAAAACCCACCATCAATCCCATGAATTAATTCATAAAACTGAAAGAAAAATATATCAATGCTACTGCGGTGCAAAGATGAGAACAGTTCTCGGTTTCCACATGCACCAAAGGATACATTCTGGGGAAAAGCCATATGAGTGTCAGGAATGTGGAGATAAATTTCTATCGGCTTCTAGAAGATTGGATCACATTAAAAGAAAGCATAGAAGTAAAGATCACGGTTGTCTTGAGTGTGACGCTAGGTTTGTTAGGCCATCGGAATTGAGAAAACATTGTCGTTTAGCGCACTTTGTACAAGAAGACCAATTGTTTCCGAAAGGCTTATGTATATCCTGCACAAGTGTGGCTGTGTCTGCTTCGGAATTCAGAATATTTGTGAACAAATCGCAACAATTATGGACCAATTGTGTAAATTCTCTTCAAACACTTCCAACTTTGAACACATCACACAAATCCCTGTACGCCATCGTTAGAGAAAACTTGCTTTTGCAAACAGTTAATAACTTTGAAGGCAATGCGAAAGACTTGATTGAGCATCTCGCCAATCGCATCGTAAAACGTAAGTCGTTGATAGTTGAGAGAAAACCGCGACATCCTCGGACTGGACCAGCCTGTAGTTGCACAGATTGTGGGAAAAGTTTTCTAAGCCCATATTACTTGAACATGCACTTACGCAACAGTGGCCAGAAAGAGGCGTGTTGGTTGTGCGGTGCCATGCTAATCAGAGGCCAGGAGATGAAGCAGCATCTCCACAAAATACACAAAACTGAAATGTTCCTGTGCACAGAATGCCCAATGCTGTTCAAAACTGACGTAGACAGGAAGCGCCACACGAAAAAGTGTCACGGCCTGGGTGTTATGACTTGCTCAGATTGTGGTCGGACATTCCAAAGGAGTGCATCCTACGATGTTCATACCCAAATGCACACAGTAAGGACTTGCAGAGCTTGTGGTGCACAATTCACTAATCGTGGCTGCTACAGAGTGCACAGGTCGAAATGCGAGCCAGAAGCTAAACCAGATTTGAAGACGATACCAAGGAACAGGCGCTCAAATATTCGTGACCCGGCAACTTTCACTTGCGACTATTGTGGCAAAACTTACCATTCCAGACCTCAATTAAAAAATCATATTTTATGGATCCACATGGATATTAGACCTCATCAGTGTCAGTGGTGTGGGAAAAGGTTCTATACTCCAGCCCGATTAGCAGAACATTCTGTGGTTCACACTCGGGTCAGGAACTTTGAATGTGACATCTGCGGTGCCAAATTAGTGTCTAAAATGGCGGCGGTGTATCATAGAAGACGTCACACGGGGGAAAGACCCTATGAGTGTCAGGATTGTGGAGAAAAGTTCATCTCTTCATCCAGAAGATCAGAACATGCTAAACGGAGACACAACAAAGGCTCTCGTCTCCACTGTCCCGAGTGCCTTGCAAGCTTTGTAAGAAGTCATGAGTTGAAGAAACATATGGATAAAATCCATGGTGTAGACAATAATGTGGTTAAAATAAAAGACAAAAGTTTTGATATGTCAACGGCTGTATGA
- Protein Sequence
- MKADWSAWFQVVEETDLPAGLCCVCADNAISTWQFRHLCHESHRHWTQISTVLMITDIPTTKDKTFYISTSGTLLKDMNNIRTLTNATKRLNFLIGNTNKVRAKYKKKKSKVAECKFKCRDCGKEFELPYFLNRHLINSSKRACTFCGKIVSREKLAVHLQRLHQRFVEFCNVCYKVFDEKDHLDRHKEILHGDSCLQCKICKLGFKSERSLSAHMYTHTLFNCSSCNSSFENRKCYLYHRHNCKGSKFTKQDVYECHDCGSKYTRKPSLRVHIVQKHLNVLPYICQICGKRSSSKTHHQSHELIHKTERKIYQCYCGAKMRTVLGFHMHQRIHSGEKPYECQECGDKFLSASRRLDHIKRKHRSKDHGCLECDARFVRPSELRKHCRLAHFVQEDQLFPKGLCISCTSVAVSASEFRIFVNKSQQLWTNCVNSLQTLPTLNTSHKSLYAIVRENLLLQTVNNFEGNAKDLIEHLANRIVKRKSLIVERKPRHPRTGPACSCTDCGKSFLSPYYLNMHLRNSGQKEACWLCGAMLIRGQEMKQHLHKIHKTEMFLCTECPMLFKTDVDRKRHTKKCHGLGVMTCSDCGRTFQRSASYDVHTQMHTVRTCRACGAQFTNRGCYRVHRSKCEPEAKPDLKTIPRNRRSNIRDPATFTCDYCGKTYHSRPQLKNHILWIHMDIRPHQCQWCGKRFYTPARLAEHSVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECQDCGEKFISSSRRSEHAKRRHNKGSRLHCPECLASFVRSHELKKHMDKIHGVDNNVVKIKDKSFDMSTAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00212824;
- 90% Identity
- iTF_00248350;
- 80% Identity
- -