Beup014986.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Boloria euphrosyne
Gene Symbol
Sall1
Assembly
GCA_951802675.2
Location
OX637884.1:11033892-11035457[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00012 0.012 16.8 0.1 2 23 197 218 196 218 0.97
2 11 0.0001 0.01 17.1 0.8 1 23 224 247 224 247 0.96
3 11 5.1e-05 0.0051 18.0 0.9 1 23 254 276 254 276 0.98
4 11 7.6e-05 0.0075 17.5 1.7 1 23 282 304 282 304 0.98
5 11 1.1e-06 0.0001 23.3 1.5 1 23 310 332 310 332 0.98
6 11 0.00072 0.071 14.4 1.2 1 23 338 360 338 360 0.96
7 11 1.3e-05 0.0012 19.9 0.2 2 23 367 389 367 389 0.96
8 11 0.0044 0.44 11.9 0.6 2 23 395 413 394 413 0.84
9 11 0.00041 0.041 15.2 0.4 1 23 419 442 419 442 0.95
10 11 0.0046 0.45 11.9 0.5 1 23 448 473 448 473 0.95
11 11 2.4e-05 0.0024 19.0 2.7 1 23 479 502 479 502 0.96

Sequence Information

Coding Sequence
ATGGACTCGCTAATTTGTAGGATTTGTCTAGATAAAGCTGGTACTATATCTGTGTTTGAAAATGAACCTGACAACATACAGTATGCCGCAAAACTGATGCGTTTAGTCAATATTATGGTGTCTGAAGATGATGGCTTGCCTAATATGATGTGCGATAGCTGTGCAAATGATTTGTCTTTATCATATCAGTTTGTTCTAAAATGTGAAGCATCCGATAAAGCATTGCGATGCCTTAGTGCTCCAATAGAACTTTATTCAGACCTTCAATCAGACATCGAGCTAAATATCAAAGAAGAAGATATTAAACATGAGCTAGATGATTGTGATAACCAAGGTGAtagttttacaaataatttcttattagaTAGTTGCtcaaaagattattttaaagataaaaatcaAAGTTCTGTACAAAAAAATTGCGATAGTAATATTACATCagaattagaaaatattacagtaaatGAAGatattgacaaaataaaaaagtcattaGAAGTAAGTGATAAGACTGACCTTAAAGGACATAAGGCTGCTAGAGGTAAATTTCGCCAAAAGAAAGTAAAAAGAGGGAAACTAGGGCCGATACAATGTGTTATTTGTGGGCATATGGCCTCAAGTCCATCAGCTATGGAGATTCACATGAGGACACATACTGGAGAAAAGccatttatttgtaatttatgtgGATCAAAATATCCTACTAAAGGCTCTCTAAAAAGACACACTGAAACATATCACTCTGCTAGAGAGCGTAAATTTACTTGTGAAACATGTGGCAGCAGTTTCTTTCGAAAGAATGATATAATAACACACATGCGAGTACATACAGATGAACGGCCATATGTATGTCTTTATTGCTCTAAAAGATTCCGTCAAGTAGCATCCAGAAACCGCCACCAACGAGTTCACACTGGTGAAAAGCCCTACCCATGCCCTATATGTAATAAGAAATTTGCCCACAAAAGCCTTGTTAAAAAACATCAAAGTGTACACAGTGATGAGAAGAAATATACCTGTCATTTATGTAACAAGTCAATGAAATCTCGTACAGCATTAAATGTTCACATAGGTCTTCATACTAaggaaaaacaaaatgtttgtaGCTTTTGTGGAATGGCATTTGCTATGAAAGGCAATTTGAAAACTCATATTCGCCGTATTCATTCAGAAAAATCAGGACAGTGCTCTGTGTGCTTAAAAACTTTTTCAGACTTAGAGGTCCATATGCGAAAACATACAGGGGAAAAACCATACATATGTGGTATATGTAATGCCGCATTTGCTGTGAAACGAAGTCTTGCGCATCACATGATGTTTAAACATGAAAACGCTGGAAAATTTAAATGCTCAATTGGTGACTGCACAAAAACCTTCCCAACAGCCACCATGTTAGAATTTCATCTATTAAAACAACACACTAATCATACCCCATATATTTGTCAGCATTGTCCTCGTAGATTTTTCCGGACAAGTGATCTCTCTCGTCATTTAAGGGCTAGCCATAtggatataaattttaaaccttTGAAAACTTTGCTGCCAAAACCTATAGCTTATAGCTAA
Protein Sequence
MDSLICRICLDKAGTISVFENEPDNIQYAAKLMRLVNIMVSEDDGLPNMMCDSCANDLSLSYQFVLKCEASDKALRCLSAPIELYSDLQSDIELNIKEEDIKHELDDCDNQGDSFTNNFLLDSCSKDYFKDKNQSSVQKNCDSNITSELENITVNEDIDKIKKSLEVSDKTDLKGHKAARGKFRQKKVKRGKLGPIQCVICGHMASSPSAMEIHMRTHTGEKPFICNLCGSKYPTKGSLKRHTETYHSARERKFTCETCGSSFFRKNDIITHMRVHTDERPYVCLYCSKRFRQVASRNRHQRVHTGEKPYPCPICNKKFAHKSLVKKHQSVHSDEKKYTCHLCNKSMKSRTALNVHIGLHTKEKQNVCSFCGMAFAMKGNLKTHIRRIHSEKSGQCSVCLKTFSDLEVHMRKHTGEKPYICGICNAAFAVKRSLAHHMMFKHENAGKFKCSIGDCTKTFPTATMLEFHLLKQHTNHTPYICQHCPRRFFRTSDLSRHLRASHMDINFKPLKTLLPKPIAYS