Hsar015517.1
Basic Information
- Insect
- Heliconius sara
- Gene Symbol
- Sall1
- Assembly
- GCA_917862395.2
- Location
- OU860795.2:10784448-10786073[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00013 0.0097 16.7 0.1 2 23 199 220 198 220 0.97 2 11 0.00024 0.018 15.9 0.8 1 23 226 249 226 249 0.95 3 11 0.0002 0.015 16.2 0.8 1 23 256 278 256 278 0.98 4 11 0.00034 0.025 15.4 1.8 1 23 284 306 284 306 0.98 5 11 5.4e-06 0.0004 21.1 1.6 1 23 312 334 312 334 0.98 6 11 6.7e-05 0.005 17.6 0.9 1 23 340 362 340 362 0.96 7 11 1.4e-05 0.0011 19.8 0.2 2 23 369 391 369 391 0.96 8 11 0.0046 0.34 11.9 0.6 2 23 397 415 396 415 0.84 9 11 0.0013 0.098 13.6 0.4 1 23 421 444 421 444 0.95 10 11 0.26 19 6.3 0.3 1 23 450 475 450 475 0.94 11 11 3.3e-05 0.0024 18.6 2.4 1 23 481 504 481 504 0.96
Sequence Information
- Coding Sequence
- ATGGAGTCGCTTATCTGTAGAATATGTCTAGATAAGTCCGGGACTATATCTGTTTTCGATCATGAGCcggataatatacaatatagtgCAAAACTTATGCGTTTAGTGAACATAATGGTTTCAGAAGACGATGGATTACCCAACATGATGTGCGACAGCTGTGCAAATGAATTGTCTTTGTCATATCAGTTTGTACAAAAGTGTGAGGCTTCAGATAAAGCTCTCAGGTGTTTAAGCGCTCCTATGGAACTTTACTCAGATCTGCACACAGACATCGACTTAAATATCAAGGAAGAAGACATTAAGCATGAGCTAGACGATTGTGATATTCAGAATGATAGTTTTaccaataatttcttattagatGGATGTTCTAAAGagtattttaaagataaaaatgagAACCCTATGGTACAAGTTAATACTGAAAACAACGTAATTATAGAAATTGAGAAAATTCCAGAATGCCAGACAGTTGAAAGTATCAATAATATTCAGATAGATTCTTGTGATAAGACTGATGATAAAGACTGTGAGGAAAATAGAAAGAAAAGtcgtagaaaaaaaatgaaaagaggTAAACTTGGGCCAATACAATGTGTTATTTGTGGACATATGGCTTCAAGTCCCTCCGCCATGGAGATTCACATGCGGACACATACTGGAGAAAAACCTTTTGTATGTAACTTGTGTGGCTCAAAATATCCTACAAAAGGTTCTCTTAAAAGGCACAATGAAACTTATCACTCAACTAGAGAACGCAAATTCACTTGTGAGACTTGTGGTAGTAGTTTTTTcagaaaaaatgatataataacacATTTAAGGGTACATACAGATGAACGGCCATACATTTGTTTGTACTGCTCGAAGAGATTCCGTCAAGTTGCTTCAAGAAATAGACACCAAAAAGTTCATACTGGTGAAAAACCATACCCTTGCCcaatatgcaataaaaaatttgcTCATAAAAACCTAGTTAAGAAACATCAAAGTGTGCACAGTGACGAGAGAAAGTATACATGTCATTTATGTAATAAGTCGGTTAAGTCTAGAACTGCTTTAAATGTTCACATAGGTCTTCATACTAATGAGAAACAAAATGTGTGCAGTTTTTGTGGCATGGCATTCGCTATGAAAGGGAACTTACAAACTCATATTCGTCGGATTCATTCAGAAAAGTCAGGTCAATGTTCTGTATGTTTAAAGACATTTTCAGACTTAGAAGTCCATATGCGTAAACATACAGGTGAAAAACCGTATATATGTGGACTCTGTAATGCAGCATTTGCCGTTAAACGGAGTTTAGCCCATCACATGATGTTTAAGCATGAAAATACAGGCAAATTCAAATGTTCTATTGGTGACTGTATCAAAACTTTTCCCACAGCCACCATGTTGGAATTTCATTTACTGAAACAACACACTAATCATACACCCTATATTTGTCAGCATTGCCCTCGACGATTTTTCCGCATGAGCGATCTTTCCCGCCATTTAAGGGCTAGCCACATGGATGTTACATTTAAGCcaacattaaaaatgttgaggccgtcgtggcgtagtggcacagaatcggattgtaaacgcgacagttgtggattcgattcccactcggtggaatga
- Protein Sequence
- MESLICRICLDKSGTISVFDHEPDNIQYSAKLMRLVNIMVSEDDGLPNMMCDSCANELSLSYQFVQKCEASDKALRCLSAPMELYSDLHTDIDLNIKEEDIKHELDDCDIQNDSFTNNFLLDGCSKEYFKDKNENPMVQVNTENNVIIEIEKIPECQTVESINNIQIDSCDKTDDKDCEENRKKSRRKKMKRGKLGPIQCVICGHMASSPSAMEIHMRTHTGEKPFVCNLCGSKYPTKGSLKRHNETYHSTRERKFTCETCGSSFFRKNDIITHLRVHTDERPYICLYCSKRFRQVASRNRHQKVHTGEKPYPCPICNKKFAHKNLVKKHQSVHSDERKYTCHLCNKSVKSRTALNVHIGLHTNEKQNVCSFCGMAFAMKGNLQTHIRRIHSEKSGQCSVCLKTFSDLEVHMRKHTGEKPYICGLCNAAFAVKRSLAHHMMFKHENTGKFKCSIGDCIKTFPTATMLEFHLLKQHTNHTPYICQHCPRRFFRMSDLSRHLRASHMDVTFKPTLKMLRPSWRSGTESDCKRDSCGFDSHSVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00212800;
- 90% Identity
- iTF_00776865;
- 80% Identity
- -