Basic Information

Insect: Heliconius himera
Gene Symbol: Sall1
Assembly: GCA_013421065.1
Location: JAATLT010024944.1:13439-15271[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0001 0.0077 16.8 0.1 2 23 201 222 200 222 0.97

2 11 0.00019 0.014 16.0 0.8 1 23 228 251 228 251 0.95

3 11 0.00015 0.012 16.2 0.8 1 23 258 280 258 280 0.98

4 11 0.00026 0.02 15.5 1.8 1 23 286 308 286 308 0.98

5 11 4.1e-06 0.00032 21.2 1.6 1 23 314 336 314 336 0.98

6 11 7.9e-05 0.0061 17.1 0.9 1 23 342 364 342 364 0.95

7 11 1.1e-05 0.00084 19.8 0.2 2 23 371 393 371 393 0.96

8 11 0.0036 0.27 11.9 0.6 2 23 399 417 398 417 0.84

9 11 0.001 0.078 13.6 0.4 1 23 423 446 423 446 0.95

10 11 0.015 1.1 10.0 0.3 1 23 452 477 452 477 0.95

11 11 2.5e-05 0.0019 18.7 2.4 1 23 483 506 483 506 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0001	0.0077	16.8	0.1	2	23	201	222	200	222	0.97
2	11	0.00019	0.014	16.0	0.8	1	23	228	251	228	251	0.95
3	11	0.00015	0.012	16.2	0.8	1	23	258	280	258	280	0.98
4	11	0.00026	0.02	15.5	1.8	1	23	286	308	286	308	0.98
5	11	4.1e-06	0.00032	21.2	1.6	1	23	314	336	314	336	0.98
6	11	7.9e-05	0.0061	17.1	0.9	1	23	342	364	342	364	0.95
7	11	1.1e-05	0.00084	19.8	0.2	2	23	371	393	371	393	0.96
8	11	0.0036	0.27	11.9	0.6	2	23	399	417	398	417	0.84
9	11	0.001	0.078	13.6	0.4	1	23	423	446	423	446	0.95
10	11	0.015	1.1	10.0	0.3	1	23	452	477	452	477	0.95
11	11	2.5e-05	0.0019	18.7	2.4	1	23	483	506	483	506	0.96

Sequence Information

Coding Sequence: ATGGAGTCGCTTATCTGTAGAATATGTCTAGATAAATCCGGGACTATATCTGTTTTTGAGCATGAGCCGGATAATGTACAATATAGCGCGAAACTTATGCGTTTAGTGAACATAATGGTTTCAGAAGACGATGGACTACCCAACATGATGTGCGACAGCTGTGCAAATGAATTGTCTTTGTCATATCAGTTTGTACAAAAGTGTGAAGCTTCGGATAAAGCTCTCAGGTGTTTAAGCGCTCCTATGGAACTTTACTCAGATCTGCATACAGATATCGATTTAAATATCAAGGAAGAAGACATTAAGCATGAGCTAGACGATTGTGATATTCAAAATGATAGTTTTAccaataatttcttattagatGGATGTTCTAAAgagtattttaaagataaaagtgAGAACCCTGTGGTACAAGATAATACCGAAAACAACGTAACTATAGAAATTGAGAAAATTCCAGAATGCCAGACAGTAGAAGGTATCAATAATATTCAGGTATCAATAGATTCTTGTGATAAGACTGATGATAAAGACTGTGAGGAAAATCGGAGGAAAAGTcgcagaaaaaaaatgaaaagaggGAAACTTGGGCCAATACAATGTGTAATTTGTGGGCATATGGCTTCAAGTCCCTCTGCCATGGAGATTCACATGCGGACACATACTGGAGAAAAACCTTTTGTATGTAACTTGTGTGGCTCAAAATATCCTACAAAAGGTTCTCTTAAAAGGCACAATGAAACTTATCACTCCACTAGAGAGCGCAAATTCACTTGTGAGACATGTGGTAGTAgttttttcagaaaaaatgatataataacacATTTAAGGGTACACACAGATGAACGGCCATACATTTGTTTGTATTGCTCGAAGAGGTTCCGTCAAGTTGCTTCTAGAAATAGACACCAAAAAGTTCATACTGGTGAAAAACCATATCCTTGCCcaatatgcaataaaaaatttGCTCATAAAAACCTAGTTAAGAAACATCAAAGTGTACACAGTGATGAGAGAAAGTATTCATgtcatttatgtaataaatcggTTAAGTCTAGAACAGCTTTAAATGTTCACATAGGTCTTCATactaatgaaaaacaaaatgtctGCAGTTTTTGTGGCATGGCATTCGCTATGAAAGGAAACTTACAAACTCATATTCGTCGGATTCATTCAGAAAAGTCAGGACAATGTTCTGTATGTTTAAAGACATTTTCAGACTTAGAAGTCCATATGCGTAAACATACAGGTGAAAAACCATATATATGTGGACTCTGTAATGCAGCATTTGCGGTTAAGCGGAGTTTAGCCCATCACATGATGTTTAAACATGAAAATACTGGCAAATTCAAATGTTCTATTGGTGACTGTGTCAAAACTTTTCCCACAGCCACCATGTtggaatttcatttattaaaacaacacACTAATCATACACCCTATATTTGTCAGCATTGCCCTCGCCGATTTTTCCGCATGAGCGATCTTTCCCGCCATTTAAGGGCTAGCCACATGGATTATTCATTTAGATGTAAAAAAACTatctaa
Protein Sequence: MESLICRICLDKSGTISVFEHEPDNVQYSAKLMRLVNIMVSEDDGLPNMMCDSCANELSLSYQFVQKCEASDKALRCLSAPMELYSDLHTDIDLNIKEEDIKHELDDCDIQNDSFTNNFLLDGCSKEYFKDKSENPVVQDNTENNVTIEIEKIPECQTVEGINNIQVSIDSCDKTDDKDCEENRRKSRRKKMKRGKLGPIQCVICGHMASSPSAMEIHMRTHTGEKPFVCNLCGSKYPTKGSLKRHNETYHSTRERKFTCETCGSSFFRKNDIITHLRVHTDERPYICLYCSKRFRQVASRNRHQKVHTGEKPYPCPICNKKFAHKNLVKKHQSVHSDERKYSCHLCNKSVKSRTALNVHIGLHTNEKQNVCSFCGMAFAMKGNLQTHIRRIHSEKSGQCSVCLKTFSDLEVHMRKHTGEKPYICGLCNAAFAVKRSLAHHMMFKHENTGKFKCSIGDCVKTFPTATMLEFHLLKQHTNHTPYICQHCPRRFFRMSDLSRHLRASHMDYSFRCKKTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00212800;
90% Identity: iTF_00776865;
80% Identity: -