Bhyb004830.1
Basic Information
- Insect
- Bolitophila hybrida
- Gene Symbol
- ZBTB41_4
- Assembly
- GCA_027564075.1
- Location
- JANSTU010051175.1:854-2984[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 8.8e-06 0.058 13.7 0.0 19 48 213 242 205 248 0.89 2 6 0.19 1.3e+03 -0.2 0.1 22 45 245 268 243 272 0.88 3 6 0.041 2.7e+02 1.9 0.1 21 45 301 325 293 339 0.80 4 6 0.00025 1.6 9.0 0.0 14 48 336 370 329 373 0.88 5 6 0.012 80 3.6 0.1 16 43 429 456 414 463 0.75 6 6 0.055 3.6e+02 1.5 0.1 23 48 465 490 461 495 0.87
Sequence Information
- Coding Sequence
- ATGCCAGACAACTATTTGATACACGAGAAGGCAGTATTGGAAAACTTAAATGCATCCAGTCAAATGTGTCGCTTCTGTCTAGATGTTGACCAGCCTCTGCGAGTTCTTACGGTGGAGCAACTAAAACAAAGCAATATTCCGGATCTGTACACACGGGCGACTGGTTGCGTGCTAGACCTGACGGACGAATATCCAGAAACAATATGTCAACGATGCGAGTCTAATATGGAGCTGGCTGCCAAAATTAGAATTGCATTTCTTGAAATCGATCAATTCTGGAAACGATTTATATTAAATCATGATCGATACTATTTTCCACCACCAATTGAAGAGGTTAAAATTGAGTCTTATCCTGTTGTAAATATTGAGATCAAAGCGGAACAGATCAAATCAGAAGACATTGTTAATTCTGATAGTGTTGACGTTCACAATACCTCAGATGCAGATGATCCGTGTGGTGATATTGTGACCAGGTCAAAAAGGAAACACACCGATGACGAGAGTGCATCAGAAACTGAGTGCCTCAAAGAGGACGACGATGACCTCAAATTGAATACGTTCTGTGATTTGTGCCAGAAAGATTTTCTAACACTATTAAAGCTAAAGGCACACATAAAAACCAAACACACGAAAAAATACAATAAGGAACAGGAAATCACATGTGGTGAATGTAACAAGGTTCTAAAAAATTCGAATTCGATGCGCAAACACATTAACATCACGCACTCCGGAAACCAGAACATTATGTGTCATGTTTGTGGTAAAATGTGCAAAAATGCTCAGTACCTGAAGGCACACTTGCGGTGTCACGAAGATCAACCGATGAGCTTCAAGTGTGACTACTGTAATATGGAGTTTCGTCTGAAGTACTCGAAGAAACTACACGAACGCGTACATACTGGTGAACGGCCATTTATGTGTGATATTTGTGGATACTCGTTTACACAACGTGGTCTACTGGCTCGTCATAAACTATTGCATACACGTCCCGAACGAGACAAGGCAAAGCCTCGAGTTGTGAACACAGAGCACGGTAATGTAAAGTGTGACATTTGCGATGCTGTCTTTTCGAGTATTGTCAATATGAAAAGTCATCTGAACAAGAAGCACAAACACATTGGTTCTGCGATTTGGGAACAAAAACTTGCTACTACCTGTATGAAGTGTCACAAGCAATTTACTGATTCTAACGATCTGGCCATGCACAAGAAGACACATCTCGATTTTGAGTGTACCATTTGTAAACATCGATTCAGCAGCGAAAAATCACTGGGCTTCCATGCAAAACAACATTCGGACAAGGAACGACCGTTTAAGTGTGACGTCTGTGGTGCTGCCTACATCCGGAAAGCACATCTTTCACAACACTATCAGGGAATGCATACAAATATACGTCCACACATCTGTGCCATATGCAACAAAGGATTCGCACAAACATTTCAACTAAAAACACACATTAAAAATGTCCACAACATCGAAAGACCCTACAAGTGTGAACTGTGTCCAAAATCGTTTGGTACTTCGCATCAACGTACCCAACACAAGCAATTCCATTCCGGTAATTTCCGGTATACATGTACATTGTGCAATAAGAGCTACATCAGTGGTTCTGCACTAACTAAACATCAGAAAAAATGTCAGCTAAAGAATGCAGCGATCGAGGTTACCACTATTAATTCTACTAAACAAGTGGATCCTGGAACAATGAATAGAAAAACTGAGTCCTATGATAATATGCCTAAATTGGAATCTGAGCCATATGTTGGTATGCAGCAGTTGGCCGCTGGAATGGTACCGCCACTACCACATTTGTGTACTATTCAGCCGTTGATGCCTTCGATGGTTGACAAAATCGAACTCGGTCAGGAGCACAGCGACTTTCAGAGGTTATGA
- Protein Sequence
- MPDNYLIHEKAVLENLNASSQMCRFCLDVDQPLRVLTVEQLKQSNIPDLYTRATGCVLDLTDEYPETICQRCESNMELAAKIRIAFLEIDQFWKRFILNHDRYYFPPPIEEVKIESYPVVNIEIKAEQIKSEDIVNSDSVDVHNTSDADDPCGDIVTRSKRKHTDDESASETECLKEDDDDLKLNTFCDLCQKDFLTLLKLKAHIKTKHTKKYNKEQEITCGECNKVLKNSNSMRKHINITHSGNQNIMCHVCGKMCKNAQYLKAHLRCHEDQPMSFKCDYCNMEFRLKYSKKLHERVHTGERPFMCDICGYSFTQRGLLARHKLLHTRPERDKAKPRVVNTEHGNVKCDICDAVFSSIVNMKSHLNKKHKHIGSAIWEQKLATTCMKCHKQFTDSNDLAMHKKTHLDFECTICKHRFSSEKSLGFHAKQHSDKERPFKCDVCGAAYIRKAHLSQHYQGMHTNIRPHICAICNKGFAQTFQLKTHIKNVHNIERPYKCELCPKSFGTSHQRTQHKQFHSGNFRYTCTLCNKSYISGSALTKHQKKCQLKNAAIEVTTINSTKQVDPGTMNRKTESYDNMPKLESEPYVGMQQLAAGMVPPLPHLCTIQPLMPSMVDKIELGQEHSDFQRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00211826;
- 90% Identity
- iTF_00211826;
- 80% Identity
- iTF_00211826;