Bger020027.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01000765.1:631765-632706[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.00087 4.1 8.2 0.0 21 49 90 118 80 122 0.86 2 5 0.42 2e+03 -0.4 0.1 22 44 119 141 114 145 0.79 3 5 0.0053 25 5.7 0.1 21 44 146 169 134 173 0.88 4 5 0.00017 0.81 10.5 0.0 21 45 174 198 170 201 0.89 5 5 0.0036 17 6.3 0.1 21 44 202 225 198 234 0.88
Sequence Information
- Coding Sequence
- ATGCAGTCTGTCTATGACGGGGCGCTTAATCTATCAAAACCTTCAATAGGCCTACAGCTACATTCTAGAAACAacataagtaaaaaaattaaacatcttGGAGGCAAGTGTTTTAAATGTGATAATTGTGGcaaagaattttctttaaattcttcACTTCGAGCGCATTGCCGTATACATGTTGCGGAGAAACTGTTTAAATGTAATGTTTGTAGTAAAGAATTCACAAAAAATTGTAAGCTTAAAAATCACTTTCGTATCCATACTGGAGAAAAGCCTCATAAATGTCATGTTTGCAACAAGGAGTTTTCAGAAAGTGGCAATTTAAAATCTCACTTACGGACGCATTCCGGAAATAAACCGTATAAATGTGAAGTCTGTAACAAAGAGTTCTTTCGAAGTGAACATCTGAAAGTACATTATCGAATTCATTCAGGAGAAAAACCATTTCACTGTGATATATGTAGCAAAGAGTTTTCGAGAAGTGCTAGACTTCGAGAGCATTTTCGTACTCATACAGGAGAGAAACCTTATAAATGTGAGATTTGTCAAGCTACATTTTCAGACAGTGGAAATCTAAAAGTACATTATCGCATCCATACTGGCGAAAAACCTTTCAAGtgcaaaatatgtaataaaaatttctCTCAACACGTTGGGCTTAAAAGACATTATCGTACTCATATTGAAAATAAGCTATTTAAGTGTGATATGTGTAGCAAACATTTCTCCAGAAGTATTTCTAccaagtttaattaG
- Protein Sequence
- MQSVYDGALNLSKPSIGLQLHSRNNISKKIKHLGGKCFKCDNCGKEFSLNSSLRAHCRIHVAEKLFKCNVCSKEFTKNCKLKNHFRIHTGEKPHKCHVCNKEFSESGNLKSHLRTHSGNKPYKCEVCNKEFFRSEHLKVHYRIHSGEKPFHCDICSKEFSRSARLREHFRTHTGEKPYKCEICQATFSDSGNLKVHYRIHTGEKPFKCKICNKNFSQHVGLKRHYRTHIENKLFKCDMCSKHFSRSISTKFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00210169; iTF_00209980;
- 90% Identity
- iTF_00210169; iTF_00209980;
- 80% Identity
- iTF_00210169; iTF_00209980;