Bger005904.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- lrrfip2
- Assembly
- GCA_003018175.1
- Location
- PYGN01001024.1:326864-366784[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.33 9.2e+03 -3.8 0.1 234 258 5 29 3 47 0.54 2 3 1.5e-115 4.1e-111 371.7 35.3 1 300 55 365 55 365 0.91 3 3 0.024 6.8e+02 -0.1 6.5 120 172 363 415 362 440 0.79
Sequence Information
- Coding Sequence
- atgaGTTCAGAAGAAATTGAGAGTGAAGTTAAGGAAGTTGTGACACAGGTGGAAAGTGAGGAAAAATTAGAAAATGGAGAAAATGGCGTCGACGAAGACAATGTATGGTCTGTTGAGGATGACGACTGTATTTGCGAGTTCCTGGACAAAAGCAATGATAAGGCTGAAGCTCGACTAGCAGCTAGACGACAGGCAAGGGCAGAAGCTCGTGAAATTCGCATGCGGGAGTTGGAGCGACAGCAGAAAGAAATAGATGAAAATGCAGATTGTGTATATGATATGTATAGAGAGCCCACAAGCCGATCAGCGCGTGTGGCTGCCACCGTGACCAGCACTAGAAGTGCATCATTAGGTGGAACCAATAGCTATCAATCCAGTAGACGCAGCTCAGAAGATTCCTTAGAAGAGGGAATTAGTCTACGAGATGTCAGACAAGAGCTGAAAGAAGTGGAGGAGAAGTTCCGCAAGGCGATGATACAGACTGCTCAACTGGACAACGAGAAGTCGTCGCTCACATATCAAGTCGAACTTCTCAAGGACCGGCTTGAGGATCTGGAAGAGTCTCATTTTCAATTACAAagaGAACACAGGGATAAAGGCCGAGAACTAGACCAACTTAAGCGAGCTTCTACAAAGCTGAAAGAGGACCTAGAGCTTTATAAATCCCAATTGGAAGAACGGGACCGGCTCATACAgGAGCAAGGCTTGATGATAGTAGGAGATGACCAGGTATCCAGTGAAGATGAGAGTAATAGTGGTGAAGATGCTAGTAATAATACACCGAAGAAAACTCCTAGAAGAGCTTTAGTGTCTATAGAATCTGCAGAACTTCTTCAAAGTGCCGGTGAAGGCTCATTAGATGTGAGATTGCGCAAGTTTGCAGAGGAAAAGAATGAATTGATGGATCAAGTTCGACATCTGAAACTGGAGTTAGAAGAAGAGCGAAGCAGGCACAAATCTGATAGGCAACGAGCTTCAGGTGGCATAAGTCTAAATGGACCCGATACGGATCTTGTTGATATTCAACGGGAAGCAAACAAGCAGCTTGGGGACTATAAATTCAAGTTGCAGAAAGCAGAACAAGATGTATCGACATTGCAGGCCAATGTCGCACGGCTTGAAAGTCAGGTTATACGATACAAGTCTGCATCAGAGACTGCTGAGAAAGTGGAAGATGAACTGAAGGTAGAGAAGAGGAAGTTACAGAGAGAGCTTCGTGAAGCTCAGGCGCGAGTTGAAGAGCTGGAGACATCCAACACCCACCTGCAGCGGAGGCTTGACAAGTTAAAGAATGCAAAATCTGCACTCCTGAAAGAGCTCTGA
- Protein Sequence
- MSSEEIESEVKEVVTQVESEEKLENGENGVDEDNVWSVEDDDCICEFLDKSNDKAEARLAARRQARAEAREIRMRELERQQKEIDENADCVYDMYREPTSRSARVAATVTSTRSASLGGTNSYQSSRRSSEDSLEEGISLRDVRQELKEVEEKFRKAMIQTAQLDNEKSSLTYQVELLKDRLEDLEESHFQLQREHRDKGRELDQLKRASTKLKEDLELYKSQLEERDRLIQEQGLMIVGDDQVSSEDESNSGEDASNNTPKKTPRRALVSIESAELLQSAGEGSLDVRLRKFAEEKNELMDQVRHLKLELEEERSRHKSDRQRASGGISLNGPDTDLVDIQREANKQLGDYKFKLQKAEQDVSTLQANVARLESQVIRYKSASETAEKVEDELKVEKRKLQRELREAQARVEELETSNTHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01288977;
- 90% Identity
- -
- 80% Identity
- -