Bmor024116.1
Basic Information
- Insect
- Beris morrisii
- Gene Symbol
- lola
- Assembly
- GCA_951812415.1
- Location
- OX638313.1:8001014-8002937[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-12 3.1e-09 37.3 0.0 4 45 356 397 353 397 0.91 2 2 0.84 6e+02 1.2 0.8 4 20 489 504 488 504 0.91
Sequence Information
- Coding Sequence
- ATGGGCAGTAGCGAAGGACAAACCTATTGCTTGCGATGGAACAATCACAAATCAAATTTGGTCGAAATTTTAGATGCTCTCATCAAAATGGAGAGCTACGTCGATTGTACTCTAGTCGTCGAAGATCAGATCCAGTTTAAAGCACATCGAGTTGTCCTGGCTGCCAATTCACCATATTTCCAAAGTATTCTACAAGACGTGCCCATGGACCATTGCAGTATCCTGATACCGGGCGTTCAAGCTTTCGAAATGCGTGCCTTATTGGAGTACATGTACACCGGCGAAGTGAACGTTACTCAGAGCCAAAttccaaaaataatgaaaatcgcCGAACAACTAGAAGTCAAAGGACTATTCGATATGACTGATCTGAAGGagaaattcaataaaatggaCGAAACAAGTCCGCGATTCACTCCAACACAGAACGCTTCGAATAAAGAAAACCATCAGCAACCGTCGTCACCAGTCATAACGACTTCAACAACAAATGTTACATCAGCTCAAAGCAGTAGCGCATCACCACCGTATAATTATAAGTCACCATATCCGGGAATTTATGCAAAGAGTCCCGGACCCTCAACGTCAGATCGGCATGGTCAGTGGCCACTCACTCCTCATTTGCCGCCAACATTGCCGAGTGCAGCAGCCGCTGCAATGCTCAGTTCGGTCTATGAAGCCGGACCCGATATGAATCCACTCAAACGAAAGAAGATATCATCCATGTCCAGTATGCTAATGTCCCGCGATACTCCAATTTTAAGAAATGTTTTGGCCCAATCACATGCAGCGGATTCGTCGCAACCCATGCCGCTTGTATGTCAGCCCGTCAAACAGGAACATCGCGATGAAAAACCAAATTCGGCAAATTGTAACGGATCTGATTATAGTATGGATAAGAAGCTCAGCAAATATGAACCTCATTCGCCATATACTGACAAATCATTCGAAGACGATTGCCTGGACATGACACCGAACTATGGTAATGAGTCGCATCTTGCTTCATATGTTCCGCAACAACAACAGAAACCGGAATGGAAGCGCTACAAGCAATACACCCGAAGTGATATCCTTTCGGCAATTGATTGCGTTCGAAATGGTATGAGTGCGTTGCAAGCGTCACGAAAGTACGGTGTCCCGTCGCGTACACTTTACGACAAGGTGAAGAAGCTCGGAATAACAACCGGACGTCCGATGAATCGAACAATCAAACGAAGCCCTAGTAGCGGCGGTAGTCCGAGTGGTTTCCATTTCGGTATTGGCGGTTCCGGTCATCCGTACAGTCAAAACGAACAAATCCTTCAGCATATACACGAGGCTAGCGAACGTGAAAAGGACCGAGAACATAATTTACCATCGACAATTCCACATCCGGCCGCTGCTCTTCTCGATCCGTCGTTTCTTCAGCAAGCGTTCGAGGCTCGAGGCGGCGAGATTGGCGGTCGAGAAGCGTTACATGCCATGGCATTGGCGGCAGCCGCTCATGCTGCCGTCAATGGTATCTCAACTAGTCCCGGAACAAATGGTACGGCCCGATCACCTAGTCCCTTGAAATATCCACGATCTCATAGTCCGCCGTTGAGTCGAGAACGCGATCATCTCGACGATGAAGATGAAAATCAGGTCGAAGATCTATCGATCGGCGGTCGAAAAGACTCACAATCACCAATTCAACAGACGCCAATTCATCATAGCtatcaacaacaacaagaacaaCGACATCAACAAATTCTActacaacagcaacaacaacaaatgGGTGTTATAGTTCCACCAATGACGAAGCTATCAATAAATAATGGCGGTGACGATTATCCGTCCGAATTGAAACGAGAAGTCCTAGCGGACGAATCGAGGGACTAA
- Protein Sequence
- MGSSEGQTYCLRWNNHKSNLVEILDALIKMESYVDCTLVVEDQIQFKAHRVVLAANSPYFQSILQDVPMDHCSILIPGVQAFEMRALLEYMYTGEVNVTQSQIPKIMKIAEQLEVKGLFDMTDLKEKFNKMDETSPRFTPTQNASNKENHQQPSSPVITTSTTNVTSAQSSSASPPYNYKSPYPGIYAKSPGPSTSDRHGQWPLTPHLPPTLPSAAAAAMLSSVYEAGPDMNPLKRKKISSMSSMLMSRDTPILRNVLAQSHAADSSQPMPLVCQPVKQEHRDEKPNSANCNGSDYSMDKKLSKYEPHSPYTDKSFEDDCLDMTPNYGNESHLASYVPQQQQKPEWKRYKQYTRSDILSAIDCVRNGMSALQASRKYGVPSRTLYDKVKKLGITTGRPMNRTIKRSPSSGGSPSGFHFGIGGSGHPYSQNEQILQHIHEASEREKDREHNLPSTIPHPAAALLDPSFLQQAFEARGGEIGGREALHAMALAAAAHAAVNGISTSPGTNGTARSPSPLKYPRSHSPPLSRERDHLDDEDENQVEDLSIGGRKDSQSPIQQTPIHHSYQQQQEQRHQQILLQQQQQQMGVIVPPMTKLSINNGGDDYPSELKREVLADESRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00202472; iTF_00202730; iTF_00203673; iTF_00324242; iTF_00324545;
- 90% Identity
- iTF_00202472; iTF_00202730; iTF_00203673; iTF_00324242; iTF_00324545;
- 80% Identity
- iTF_00203673;