Bcha030357.1
Basic Information
- Insect
- Beris chalybata
- Gene Symbol
- lola
- Assembly
- GCA_949128065.1
- Location
- OX421897.1:5413257-5415177[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-12 1.5e-09 38.7 0.0 4 45 356 397 353 397 0.92 2 2 1 7.5e+02 1.2 0.8 4 20 489 504 488 504 0.91
Sequence Information
- Coding Sequence
- ATGAGCAGTAACGAAGGACAAACCTATTGCTTACGATGGAACAATCACAAATCGAATTTGGTCGAAATTTTAGATGCTCTCATCAAAATGGAGAGCTACGTCGACTGTACTCTAGTCGTCGAAGATCAGATCCAATTTAAGGCACATCGAGTTGTCCTGGCTGCCAATTCACCATATTTCCAAAGTATTCTACAAGACGTGCCCATGGACCATTGCAGTATCCTGATACCGGGCGTTCAAGCTTTCGAAATGCGTGCCTTATTGGAGTACATGTACACCGGTGAAGTGAACGTTACTCAGAGCCAAATtccaaaaataatgaaaatcgCCGAACAACTAGAAGTCAAAGGACTATTCGATATGACTGATCTGAAggagaaattcaataaaatggACGAAACAAGTTCGCGATTCACTCCAACACAGAACGCTTCGAATAAAGAAAACCATCAGCAACAGTCGTCACCAGTCATAACGACTTCAACAACAAACGTTACATCAGCTCAAAGCAGTAGCGCATCACCACCGTATAATTATAAGTCACCATATCCGGGAATTTATGCCAAGAGTCCCGGACCGTCAACGTCAGATCGGCATGGTCAGTGGCCACTTACTCCTCATTTGCCGCCAACATTGCCGAGTGCAGCAGCCGCTGCAATGCTCAGTTCGGTCTATGAGGCCGGACCCGATATGAATCCACTCAAACGAAAGAAGATATCATCCATGTCCAGTATGCTAATGTCCCGCGATACTCCAATTTTGAGAAATGTTTTGGCCCAATCCCATGCAGCGGATTCGTCGCAACCAATGCCGCTTGTTTGTCAGCCCGTCAAACAGGAACATCGCGAAGAAAAATCGAATTCGGCAAATTGTAACGGATCTGATTATAGTATGGATAAGAAGCTCAGCAAATATGAACCTCATTCGCCATATACCGACAAATCATTCGAAGACGATTGCCTAGACATGACACCGAACTACGGCAATGAGTCCAATCTTGCTTCATATGTTCCGCAACAACAACAGAAACCGGAATGGAAGCGCTACAAGCAATACACCCGTAGTGATATCCTTTCGGCAATTGAATGTGTTCGAAACGGTATGAGTGCGTTGCAAGCGTCACGAAAGTACGGTGTCCCGTCGCGTACACTTTACGACAAGGTGAAGAAGCTCGGTATAACAACCGGACGTCCGATGAATCGAACAATCAAACGAAGCCCTAGTAGCGGCGGTAGTCCGAGTGGTTTTCATTTCGGTATTGGCGGTTCCGGTCATCCGTACAGTCAGAACGAACAAATCCTTCAGCATATGCACGAGGCTAGCGAACGTGAAAAGGACCGCGAACATCATTTACCGTCGACAATTCCACATCCGGCCGCTGCTCTTCTCGATCCGTCGTTCCTGCAGCAAGCGTTCGAGGCTCGAAGCGGCGAGATTGGCGGTCGAGAAGCGTTACATGCCATGGCATTGGCGGCAGCCGCTCATGCTGCCGTCAATGGTATTTCAACTAGTCCCGGAACAAATGGCACGGCCCGATCACCTAGTCCATTGAAATATCCACGATCTCATAGTCCGCCGTTGAGTCGAGAACGCGATCATCTCGACGATGAAGATGAAAATCAGGTCGAAGATCTATCGATCGGGGGTCGAAAAGACTCACAATCACCGATTCAACAGACGCCAATTCATCATAGCTATCAACAACAACAGGAACAACGTCATCAACAAATTCTActacaacagcaacaacaacaaacggGTGTTATAGTTCTACCAATGACGAAGATGTCGTTAAATGGCGGTGACGATTATCCGTCCGAATTGAAACGAGAAGTCCTGGCAGACGAATCGAGGGACTAA
- Protein Sequence
- MSSNEGQTYCLRWNNHKSNLVEILDALIKMESYVDCTLVVEDQIQFKAHRVVLAANSPYFQSILQDVPMDHCSILIPGVQAFEMRALLEYMYTGEVNVTQSQIPKIMKIAEQLEVKGLFDMTDLKEKFNKMDETSSRFTPTQNASNKENHQQQSSPVITTSTTNVTSAQSSSASPPYNYKSPYPGIYAKSPGPSTSDRHGQWPLTPHLPPTLPSAAAAAMLSSVYEAGPDMNPLKRKKISSMSSMLMSRDTPILRNVLAQSHAADSSQPMPLVCQPVKQEHREEKSNSANCNGSDYSMDKKLSKYEPHSPYTDKSFEDDCLDMTPNYGNESNLASYVPQQQQKPEWKRYKQYTRSDILSAIECVRNGMSALQASRKYGVPSRTLYDKVKKLGITTGRPMNRTIKRSPSSGGSPSGFHFGIGGSGHPYSQNEQILQHMHEASEREKDREHHLPSTIPHPAAALLDPSFLQQAFEARSGEIGGREALHAMALAAAAHAAVNGISTSPGTNGTARSPSPLKYPRSHSPPLSRERDHLDDEDENQVEDLSIGGRKDSQSPIQQTPIHHSYQQQQEQRHQQILLQQQQQQTGVIVLPMTKMSLNGGDDYPSELKREVLADESRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00203432;
- 90% Identity
- iTF_00203432;
- 80% Identity
- iTF_00202730;