Ctib017199.1
Basic Information
- Insect
- Chorisops tibialis
- Gene Symbol
- lola
- Assembly
- GCA_963669355.1
- Location
- OY770263.1:25459734-25461662[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2e-13 2.8e-10 41.2 0.0 3 45 353 395 351 395 0.92 2 2 1 8.5e+02 1.2 0.8 4 20 487 502 486 502 0.91
Sequence Information
- Coding Sequence
- ATGGGCAGCACCGAAGGACAAACCTATTGTTTGCGATGGAACAATCACAAATCAAATTTGGTCGAAATTCTCGATGCCCTTATCAAAATGGAAAGCTACGTCGATTGTACGCTTGTCGTCGAAGATCAAATTCAATTTAAAGCCCATCGGGTTGTTCTGGCCGCCAATTCACCATATTTCCAAAGTATCTTGCAAGATGTACCGATGGATCATTGTAGCATCCTGATACCGGGCGTTCAAGCGTTCGAAATGCGTGCCTTATTAGAGTACATGTACACCGGCGAGGTGAACGTTACGCAAAGtcaaattccaaaaataatgaaaatcgcGGAGCAATTGGAAGTGAAAGGATTGTTCGATATGACGGATCTGAAggagaaattcaataaaatggaTGAGACCAGTCCGCGTTTTACTCCCACTCAGAACGCTTCGAATAAGGAAAACGAACAGCAATGTTCGCCGGTAATTACGACTTCGACAAATGTTGCATCGGCTCAAAGTAGTAGTGCGTCGCCACCGTACAGTTACAAATCGCCGTATCCCGGCATCTATGCCAAAAGTCCGGGACCTTCGACTTCGGATCGACATGCTCCGTGGCCACTAACGCCGCATCTGCCACAAACTATGCCAAGTGCGGCGGCCGCTGCAATGCTCAGTTCCGTCTATGAAACCGGTGCCGATATGAATCCTTTGAAACGGAAGAAGATCCAATCGATGTCCAGCATGCTAATGTCCCGCGATACGCCGATCTTGAGAAATGTATTGGCACAATCGCATGCAGCCGATTCGTCACAACCTATGCCACTCGTATGCCAGCCAATCAAACAGGATGCCCGTGATGAAAAGAATACATCGGCTAATTGCAATGGTTCCGATTACAGTATGGATAagAAGCTCAGCAAATACGAACCTCATTCTCCATACACCGATAAATCCTTCGAAGACGATTGCCTGGACATGCCACCAAATTACGGCAGTGATTCACACCTCGCCTCGTATGTAccgcaacaacaacaaaaaccagAATGGAAACGATACAAGCAATACACACGATCCGACATTCTAGCGGCAATCGAATGCGTCCGGAACGGTATGAGTGCGTTACAAGCGTCCCGCAAATACGGTGTCCCGTCGCGAACGCTCTACGATAAAGTTAAAAAGTTGGGCATTACAACCGGCCGACCGATGAATCGAACAATCAAGCGCAGTCCTAGTAACGGTGGCAGCCCGAGTGGATTCCATTTCGGAATTGGCGGACCGGGACATCCGTACGGTCAGAGCGAACAGATCCTACAGCAAATGCACGAAGCAAGTGAACGTGAAAAGGATCGTGAACATCACTTACCGCCGAATATTCCGCATCCGGCCGCGGCTCTTCTCGATCCTTCGTTCCTACAGCAAGCGTTCGAAGCGCGGGGCGGTGAGATCGGAGGTCGGGAGGCGCTTCACGCAATGGCCTTGGCAGCAGCTGCTCATGCGGCAGTCAACGGTATCTCAACTAGTCCCGGGACGAATGGTAACGCAGCGCGATCGCCGAGTCCTATGAAATATTCGCGATCGCATAGTCCACCGTTAAGTCGGGAACGCGATCACATGGACGATGAGGACGACGATCAGGTTGAGGATCTATCGATCGGCGCCCGAAAAGAATCCCCCCAATCTCCCATTCAACAGACTCCGATTCATCATAGCTATCAACAGCAACAAGAGCAACGACATCAACAAATCCTTCAGCAAcatcatcaacaacaacaacaaaccgGAGTTATAGTGCCACCAATGAcgaaattgcctacaaatgGCGTTGAAGATtattcaaacgatgtgaaacgAGAGATTTTAGCCGATGAATCGAGGGATTAA
- Protein Sequence
- MGSTEGQTYCLRWNNHKSNLVEILDALIKMESYVDCTLVVEDQIQFKAHRVVLAANSPYFQSILQDVPMDHCSILIPGVQAFEMRALLEYMYTGEVNVTQSQIPKIMKIAEQLEVKGLFDMTDLKEKFNKMDETSPRFTPTQNASNKENEQQCSPVITTSTNVASAQSSSASPPYSYKSPYPGIYAKSPGPSTSDRHAPWPLTPHLPQTMPSAAAAAMLSSVYETGADMNPLKRKKIQSMSSMLMSRDTPILRNVLAQSHAADSSQPMPLVCQPIKQDARDEKNTSANCNGSDYSMDKKLSKYEPHSPYTDKSFEDDCLDMPPNYGSDSHLASYVPQQQQKPEWKRYKQYTRSDILAAIECVRNGMSALQASRKYGVPSRTLYDKVKKLGITTGRPMNRTIKRSPSNGGSPSGFHFGIGGPGHPYGQSEQILQQMHEASEREKDREHHLPPNIPHPAAALLDPSFLQQAFEARGGEIGGREALHAMALAAAAHAAVNGISTSPGTNGNAARSPSPMKYSRSHSPPLSRERDHMDDEDDDQVEDLSIGARKESPQSPIQQTPIHHSYQQQQEQRHQQILQQHHQQQQQTGVIVPPMTKLPTNGVEDYSNDVKREILADESRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00203432;
- 90% Identity
- iTF_00203432;
- 80% Identity
- iTF_00324545;