Basic Information

Insect: Beris chalybata
Gene Symbol: -
Assembly: GCA_949128065.1
Location: OX421894.1:138039076-138047685[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.5e-05 0.0086 17.7 2.7 1 23 469 491 469 491 0.97

2 18 1.2e-05 0.0016 20.0 0.4 1 23 497 519 497 519 0.97

3 18 6.5e-05 0.0086 17.7 1.7 1 23 525 547 525 547 0.98

4 18 4.6e-05 0.0061 18.2 3.0 1 23 553 575 553 575 0.97

5 18 0.0002 0.027 16.1 4.7 1 23 581 603 581 603 0.99

6 18 0.00011 0.014 17.0 5.7 1 23 609 631 609 631 0.97

7 18 5e-07 6.7e-05 24.3 4.3 1 23 637 659 637 659 0.98

8 18 1.9e-07 2.5e-05 25.7 2.4 1 23 665 687 665 687 0.97

9 18 0.00025 0.034 15.8 5.7 1 23 721 743 721 743 0.97

10 18 0.0001 0.013 17.1 6.4 1 23 749 771 749 771 0.98

11 18 2.7e-05 0.0036 18.9 4.7 1 23 777 799 777 799 0.98

12 18 2e-05 0.0026 19.3 7.1 1 23 805 827 805 827 0.98

13 18 4.5e-06 0.0006 21.3 7.1 1 23 833 855 833 855 0.97

14 18 0.00095 0.13 14.0 10.0 1 23 861 883 861 883 0.97

15 18 0.00035 0.047 15.4 9.5 1 23 889 912 889 912 0.95

16 18 0.00018 0.024 16.3 0.4 1 23 918 940 918 940 0.97

17 18 0.0018 0.24 13.1 3.3 1 23 950 972 950 972 0.98

18 18 2.7e-05 0.0036 18.9 2.1 3 23 980 1001 978 1001 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.5e-05	0.0086	17.7	2.7	1	23	469	491	469	491	0.97
2	18	1.2e-05	0.0016	20.0	0.4	1	23	497	519	497	519	0.97
3	18	6.5e-05	0.0086	17.7	1.7	1	23	525	547	525	547	0.98
4	18	4.6e-05	0.0061	18.2	3.0	1	23	553	575	553	575	0.97
5	18	0.0002	0.027	16.1	4.7	1	23	581	603	581	603	0.99
6	18	0.00011	0.014	17.0	5.7	1	23	609	631	609	631	0.97
7	18	5e-07	6.7e-05	24.3	4.3	1	23	637	659	637	659	0.98
8	18	1.9e-07	2.5e-05	25.7	2.4	1	23	665	687	665	687	0.97
9	18	0.00025	0.034	15.8	5.7	1	23	721	743	721	743	0.97
10	18	0.0001	0.013	17.1	6.4	1	23	749	771	749	771	0.98
11	18	2.7e-05	0.0036	18.9	4.7	1	23	777	799	777	799	0.98
12	18	2e-05	0.0026	19.3	7.1	1	23	805	827	805	827	0.98
13	18	4.5e-06	0.0006	21.3	7.1	1	23	833	855	833	855	0.97
14	18	0.00095	0.13	14.0	10.0	1	23	861	883	861	883	0.97
15	18	0.00035	0.047	15.4	9.5	1	23	889	912	889	912	0.95
16	18	0.00018	0.024	16.3	0.4	1	23	918	940	918	940	0.97
17	18	0.0018	0.24	13.1	3.3	1	23	950	972	950	972	0.98
18	18	2.7e-05	0.0036	18.9	2.1	3	23	980	1001	978	1001	0.95

Sequence Information

Coding Sequence: ATGAATTCCGAACATTCTGTGAGTGTGGAAAGCGGCGGCGAGACGCAAATTCGTCACTCGCCCTCGCAGCcccaacaacagcagcagcagcaccaccatcaacagcagcagcagcagcaacaacaacaacagcagcactCCCAACACCCGCGTCATCCGCATCAGCAGCCGCTCGACGAGAAGATGATAATGACCTTCTCTCGACAGCAACAAGCCcatcaacaacagcagcagcaacagcaacaaaaCCAACAtcagcaacaacagcagcagcagcaacaacaacaacaacagcagcagcaacagcaacaacaacagtcCGGACAACATCAGCAGGACGCGCGAATTGGGGGTGTTATTCAGCCAGTGAGCGAGGCTGATATCAAGCATCCTTTGCCACTGGGTGCCGCTCCACATCTCGGTAAGTACTGGGTAGTGACTAATCTTTTCCAAGGACCTGGTCAGAATACCACCTATAACATAACGTCGCCTCCGACATCGACCGGCGTCGTTCTACCGGCCCAAACACCACAAACCCATACCACAATAGCCGGATCGATGCTGAAATTGGAAACTATCAAACAAGAAGATCCAAACATGCATCAACAACGTCACGTTCAGCAACAAATCGTTACAGTTAGTGCGGCCAACACAATTCAAATACCGAATCCGATGATTGTAACGCAATCGCAACAAATGTCGAACGGAACGTTGATTCAGAACAATCAACAGTCCGAACATATTCAAGTTTCGGTCAATCCCGAAAACAGTATAATGATAATGGACACGTCGAACTCCAATAATAAATCGGACAAACTGATGAACAATCAGAACATGTCGAACGCGGAACCGATGCAAGGCGTCGAACGTATCGTACAGCATCACTCGATGCAGGAATCGATAAAGGAGGAGAAACCGTTTGCCAATTGTAAAATACTTCCGCATCAGCAAATCCATTCGCAGCATATAACCGGCGATCAGAAAATGCATTTGCCGCACTTGTTGGACGTTAGATCCGCGGACGGATCGCTGATTAAGATTCAATCGCAGGAGCAAGAGATCGGCAAATCGATGGGCGTTGAGATGTACAAAGTGAACATCGAAGATTTAAGCCAGTTCCTATCATATCACGAAGTTTTCGGTAAACTACACGGCGATGTAATCACACATCCGATTTCGCATACCAGTGCGCATCCAACGAATACGATCAGCAATACGGTCGGAATGAAGACAACGAACGCGGTTAATGTAACGGCCGGTTCGAGTAATGCTACATCTTCGGGCGAACTGATAATGCCAAAAATGGAAGCTGTTGCACAAATGACCGGCATCACACAGAGTCATACGGCCGCGTCCGGTAATCTTCATACGATCGGTGACGCCGGAAGTATTACGCCGGCGACGCATTCGTGCGATATATGCGGAAAAATGTTCCAATTTCGATATCAATTGATCGTACATCGTCGCTATCATAGCGAACGAAAGCCGTTTATGTGTCAGGTATGCGGTCAGGGTTTTACAACCTCGCAGGATTTAACGCGACACGGAAAAATCCATATTGGCGGTCCGATGTTTACGTGTAACGTTTGCTTTCATGTTTTCGCGAACGATGCCAGTCTCGAGCGTCACATGAAACGACATTCGACCGATAAACCGTTTGCATGTACCGTTTGTCAGAAGACGTTCGCTCGTAAAGAGCATCTCGATAATCATTTCCGTAGTCATACCGGCGAGACACCGTATCGTTGTCAGTTCTGTGCGAAAACCTTTACACGTAAGGAGCACATGGTGAATCATGTCCGGAAGCATACCGGCGAGACACCGCATCGTTGCGATATTTGTAAGAAGTCGTTCACGCGTAAGGAGCACTACGTTAATCATTACATGTGGCATACTGgtGAAACACCGCATCAGTGCGAAGTTTGTGGCAAGAAATACACTCGAAAGGAACATTTGGCAAATCATATGCGTTCCCATACCAATGACACGCCGTTTCGATGCGAAATTTGCGGTAAAAGTTTCAGCCGAAAGGAACATTTCACAAATCATATATTGTGGCATACAGGTAGGGCGGGCATTCGATTTGAACCTATAAGAATCGCCGTGAATGactctttttcctttttttctttctttttggaAACCACAGGCGAGACTCCCCATCGTTGCGATTTCTGCGCTAAAACCTTCACTCGCAAAGAGCATCTACTGAATCACGTCCGACAGCATACAGGCGAATCGCCGCATCGCTGTACCTATTGCTTGAAGACGTTCACACGTAAAGAACATCTCGTCAATCACGTCCGTCAACATACCGGCGAGACACCGTTCAAGTGTACGTTCTGCACGAAAGCGTTCACTCGCAAAGATCACATGGTCAATCATATTAGGCAGCATACAGGCGAATCTCCGCACAAGTGTACGTACTGTACGAAAACTTTTACACGCAAGGAGCATCTTGTGAATCACGTTCGTCAGCATACCGGCGAATCGCCGCATCGTTGCTCGTACTGTAATAAGACGTTCACGCGTAAAGAGCACCTTACGAATCACGTTCGTTTGCATACTGGCGATTCGCCGCACAAGTGCGAATGTTGTCAGAAAACGTTCACGCGAAAGGAACATCTCAACAATCACATGCGACAACATTCGAGCGACAATGCTCATTGTTGTAATGTGTGTAATAAGCCGTTTACGCGAAAGGAACATCTCATCAATCACATGTCGCGCTGCCATACCGGAGATCGGCCGTTTGCCTGTGAGACTTGCGGAAAATCGTTCCCGCTTAAAGGTAACTTGATCTTCCATCAACGAAGCCATACTAAAGGTCAGGATGTTGAGCGTCCATTCCGTTGTGAGAAGTGCCCGAAAGATTTCATATGCAAAGGACATTTGGTATCACATATGCGTGCTCATTCCGGCGAAAAACCGCATCTGTGCACGCTATGCAGCAAGGCATTCGTCGAAAAGGGCAATTTAAAGCGTCACATGAAAATGAATCATCCGAACGCTGTTATACCACCGCTCGGTCTAACACAAGTCATCAAAACCGAAACGAATCCGATCGCTCTGGCTACCGTTCCGcaatataatacaattaaaacGGAAGTTAATCCAACGACAATGGCAACCGCACCGCAATACATGAACGAACGGATTCAATTGCTTACCAAAGCCAATCTACTCCCAATAAATCCGTTGATTCCACATCAAGCGCCTACAATGCATACAATACAGCAAATAACAGCAACGTCGGCAAATTCAACGATCAGCaataatacaagttcgttgtccGGCGGTCTAGTGCCAATTGTTACATCGACAATTACATCACATACCAGTCAACAGCAACATGTAACGTCGCAAattcaacaacaacagcagcagcaatcacaacaacaacagcagcagcagcaacagcaacatcatcaacaacaacagcagcagcaacagcaacaacagcagcagcagcaacaacaacagcaacatcaAAACAACAGCCAAACACCGGATCCAACACAAACGGTACCGATCGCTATTATACAAGCTGGCGATCCAACAACAATTACCCGTGCTTCGATTCAACTGCAACATTTGCCGGCCGGTGTCGATCAACATTCGGTTGTTTATTGA
Protein Sequence: MNSEHSVSVESGGETQIRHSPSQPQQQQQQHHHQQQQQQQQQQQQHSQHPRHPHQQPLDEKMIMTFSRQQQAHQQQQQQQQQNQHQQQQQQQQQQQQQQQQQQQQQSGQHQQDARIGGVIQPVSEADIKHPLPLGAAPHLGKYWVVTNLFQGPGQNTTYNITSPPTSTGVVLPAQTPQTHTTIAGSMLKLETIKQEDPNMHQQRHVQQQIVTVSAANTIQIPNPMIVTQSQQMSNGTLIQNNQQSEHIQVSVNPENSIMIMDTSNSNNKSDKLMNNQNMSNAEPMQGVERIVQHHSMQESIKEEKPFANCKILPHQQIHSQHITGDQKMHLPHLLDVRSADGSLIKIQSQEQEIGKSMGVEMYKVNIEDLSQFLSYHEVFGKLHGDVITHPISHTSAHPTNTISNTVGMKTTNAVNVTAGSSNATSSGELIMPKMEAVAQMTGITQSHTAASGNLHTIGDAGSITPATHSCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCNVCFHVFANDASLERHMKRHSTDKPFACTVCQKTFARKEHLDNHFRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGETPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGRAGIRFEPIRIAVNDSFSFFSFFLETTGETPHRCDFCAKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHVRQHTGETPFKCTFCTKAFTRKDHMVNHIRQHTGESPHKCTYCTKTFTRKEHLVNHVRQHTGESPHRCSYCNKTFTRKEHLTNHVRLHTGDSPHKCECCQKTFTRKEHLNNHMRQHSSDNAHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLIFHQRSHTKGQDVERPFRCEKCPKDFICKGHLVSHMRAHSGEKPHLCTLCSKAFVEKGNLKRHMKMNHPNAVIPPLGLTQVIKTETNPIALATVPQYNTIKTEVNPTTMATAPQYMNERIQLLTKANLLPINPLIPHQAPTMHTIQQITATSANSTISNNTSSLSGGLVPIVTSTITSHTSQQQHVTSQIQQQQQQQSQQQQQQQQQQHHQQQQQQQQQQQQQQQQQQQHQNNSQTPDPTQTVPIAIIQAGDPTTITRASIQLQHLPAGVDQHSVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00324623; iTF_00203760;
90% Identity: iTF_00203760;
80% Identity: -