Btab009184.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- -
- Assembly
- GCA_903994105.1
- Location
- NW:5487-8166[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.087 98 2.8 0.2 11 44 181 215 179 219 0.76 2 19 0.00097 1.1 9.0 0.2 21 45 220 244 215 248 0.90 3 19 0.001 1.1 9.0 0.5 21 46 248 273 244 279 0.87 4 19 0.0072 8.1 6.3 0.1 21 44 276 299 271 303 0.90 5 19 0.00013 0.15 11.8 0.1 21 45 304 328 300 335 0.87 6 19 0.04 45 3.9 0.0 21 47 332 358 328 365 0.83 7 19 0.066 74 3.2 0.0 20 44 359 383 349 392 0.78 8 19 0.0041 4.6 7.0 0.1 21 48 416 442 403 447 0.85 9 19 0.098 1.1e+02 2.6 0.5 18 45 441 468 439 476 0.80 10 19 0.79 8.9e+02 -0.3 0.1 21 44 472 495 468 499 0.84 11 19 0.0032 3.6 7.4 0.0 11 44 489 523 486 527 0.83 12 19 0.012 14 5.5 0.1 21 44 528 551 523 555 0.89 13 19 0.0055 6.2 6.6 0.1 21 47 556 582 552 589 0.85 14 19 0.33 3.8e+02 0.9 0.1 21 46 584 609 580 616 0.78 15 19 0.31 3.5e+02 1.0 0.5 20 45 611 636 605 644 0.70 16 19 0.21 2.4e+02 1.6 0.2 18 46 637 665 634 672 0.83 17 19 0.3 3.4e+02 1.1 0.7 11 45 657 692 645 701 0.74 18 19 2.5 2.9e+03 -1.9 0.1 23 45 698 720 689 727 0.77 19 19 1.9 2.2e+03 -1.5 0.1 22 44 725 747 719 755 0.69
Sequence Information
- Coding Sequence
- ATGGATCAATCCGAATTCAAATGCACATCCGAAGGAGGACTTAGCGCTCCTGAAGACAGGATCCCAGAGATTTCTACAGGCAGAATAAGTGTGAAGGATTCACAGGACATTATCCCGGAGGTTGGTAACACTATATTCATAAAGTGTGAGTTAACTGAACCGGAAGCAGAATCTGCATATGACACGGAATTTGCCTCTCATACACCTTGCCATGTGAAAACTGAAATTGGAACTTCtccaagtgaagaaaaaaagtcagtTGAACACTTCAATAGCGCCTCGTGTTCCTCCAATTCTCTCATTGGTCATTCCATCACGATAAAATCGGAAGGAgacaatgaaaatgaaaattggagCGACCAGTTACATACCAGTATTGAGATTAAAAACGAAGACCCTCTTAAGACTGACAGCTATGAATGCACTTACGTAACGGAAGATAGagaacacgattttgaaaatgagattCAAAATCATATGCCAACCACGACATGCAAACCGCTCAGTTGCAATCGTTGCTCGGCCGGTTTTGCGATAAAAGGTACTTTAAAAACGAACATGCGAacacataccggtgagaaaccatttgCTTGCAGCCATTGCCCGGCTTGTTTCGCtagaaaaggaaatttaataCAACACGTGCGAacacataccggtgagaaaccatttacTTGCAGCCAGTGCTCGGCCCCTTTTGCTCAGAAACAACATTTAAAACGCCACATGCGAacacataccggtgagaaaccatttacTTGCAGCCAGTGCTCGGCCCGTTTTGCTCAGAAACAACATTTACAACGCCACATGCGAACACAtaccggtgaaaaaccattcacttgcagccattgctcggcttgtttcgctacaaaaggaaatttaaaacaacaCATGCGAAAACAtaccggtgaaaaaccattcactTGCAGCCATTGCTCGGCTTCTTTCGctagaaaaagaaatttaaaaaaacacatgcGAAAACAtaccggtgaaaaaccattcactTGCAGCCAGTGCTCGGCTTGTTTCGCTGGAAAAGGAGATTTAAAACAACACATGCGAACACATACCAGTGAAAAACCATTCACTTGCAGCCAATGCTCGGTCTCTTTCGCTCAAAAAGGACCGTTATTAAATCACATGCGAacacataccggtgagaaaccattcagatGCAGCCATTGCTCGGTCTGCTTCAtagaaaaaggaagtttaatacggcacatgcgaacacataccggtgaaaaaccattcactTGCAGCCAGTGCTCGGCTTGTTTCGCTGGAAAAGGAGATTTAAAACGGCACATGCGAAGACATACCTGTGAAAAACCATTCACTTGCAGCCAATGCTCGGTCTGTTTTGCTCAAAAAGGAACGTTATTAAATCACATGCGAacacataccggtgagaaaccattcagatGCAGCCATTGCTCGGTCTGCTTCTCTGAAAAAGGAACTTTAAAACGGCACATGCGAacacataccggtgagaaaccattcactTGCAGCCAGTGCTCGGCTTGTTTCGCTGGAAAAGGAGATTTAAAACGGCACATGCGAacacataccggtgagaaaccatttacttgcagtcattgctcggcCCGTTTTGCTCAGACACAACATTTAAAATTCCACATGCGAacacataccggtgagaaaccattcactTGCAGCTATTGCTCGGCTTGTTTCGCTAGAAAAGGAGATTTAAAACAACACTTGCGAACACATACCGGGGAAAAACCATTTACTTGCAGCCATTGCTCGGACTGCTTCGCTCTAAACGCAACTTTAATACGGCACATGCGAACACATACcagtgagaaaccattcagatGCAGCCAATGCTCGGTCTGTTTCGCTCAAAAAGGAACGTTATTAAATCACATGCGAAGacataccggtgagaaaccattcagatgcagccattgctcggtctgcttcactgaaaaaggaactttaaaacggcacatgcgaacacataccggtgagaaaccatttacTTGCAGCCATTGCTCGGACTGCTTCACCAAAAAAGGAGCTTTAATACAACACATGCGAACACATACTGGTGGCAAACCATTTATTTGCAGCCATTGCTCGGCTTGTTTCGctctaaaaggaaatttaatagAACACATGCAGACACATACCGGACAGAAACCATTTACTTGCAGCCATTGCTCGGTCTGCTTCACTCGAAAAGGAAGTTTTATACGACACATGCGAACACATACTGTTGAGGAACCATCAATTACTTGTAGCTATCGCCCTGCACGTTTTGCTGAGTGA
- Protein Sequence
- MDQSEFKCTSEGGLSAPEDRIPEISTGRISVKDSQDIIPEVGNTIFIKCELTEPEAESAYDTEFASHTPCHVKTEIGTSPSEEKKSVEHFNSASCSSNSLIGHSITIKSEGDNENENWSDQLHTSIEIKNEDPLKTDSYECTYVTEDREHDFENEIQNHMPTTTCKPLSCNRCSAGFAIKGTLKTNMRTHTGEKPFACSHCPACFARKGNLIQHVRTHTGEKPFTCSQCSAPFAQKQHLKRHMRTHTGEKPFTCSQCSARFAQKQHLQRHMRTHTGEKPFTCSHCSACFATKGNLKQHMRKHTGEKPFTCSHCSASFARKRNLKKHMRKHTGEKPFTCSQCSACFAGKGDLKQHMRTHTSEKPFTCSQCSVSFAQKGPLLNHMRTHTGEKPFRCSHCSVCFIEKGSLIRHMRTHTGEKPFTCSQCSACFAGKGDLKRHMRRHTCEKPFTCSQCSVCFAQKGTLLNHMRTHTGEKPFRCSHCSVCFSEKGTLKRHMRTHTGEKPFTCSQCSACFAGKGDLKRHMRTHTGEKPFTCSHCSARFAQTQHLKFHMRTHTGEKPFTCSYCSACFARKGDLKQHLRTHTGEKPFTCSHCSDCFALNATLIRHMRTHTSEKPFRCSQCSVCFAQKGTLLNHMRRHTGEKPFRCSHCSVCFTEKGTLKRHMRTHTGEKPFTCSHCSDCFTKKGALIQHMRTHTGGKPFICSHCSACFALKGNLIEHMQTHTGQKPFTCSHCSVCFTRKGSFIRHMRTHTVEEPSITCSYRPARFAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00201869;
- 90% Identity
- iTF_00201869;
- 80% Identity
- iTF_00201869;