Btab009184.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bemisia tabaci
Gene Symbol
-
Assembly
GCA_903994105.1
Location
NW:5487-8166[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2.6e-06 0.00012 22.0 2.0 1 23 196 218 196 218 0.97
2 20 2e-06 9.1e-05 22.3 3.2 1 23 224 246 224 246 0.99
3 20 2.8e-06 0.00013 21.9 4.2 1 23 252 274 252 274 0.99
4 20 3.9e-06 0.00017 21.4 6.0 1 23 280 302 280 302 0.99
5 20 1e-06 4.5e-05 23.3 5.3 1 23 308 330 308 330 0.99
6 20 9.9e-06 0.00045 20.1 2.0 1 23 336 358 336 358 0.99
7 20 1.2e-05 0.00056 19.8 0.5 1 23 364 386 364 386 0.99
8 20 1.4e-05 0.00063 19.7 4.6 1 23 392 414 392 414 0.99
9 20 9.1e-06 0.00041 20.3 2.5 1 23 420 442 420 442 0.99
10 20 9e-06 0.0004 20.3 2.8 1 23 448 470 448 470 0.99
11 20 1.1e-05 0.00051 20.0 6.8 1 23 476 498 476 498 0.99
12 20 4e-06 0.00018 21.4 2.3 1 23 504 526 504 526 0.99
13 20 0.0098 0.44 10.7 6.6 1 23 532 554 532 554 0.99
14 20 2.6e-06 0.00011 22.0 3.2 1 23 560 582 560 582 0.99
15 20 0.00045 0.02 14.9 4.1 1 23 588 610 588 610 0.99
16 20 2.1e-05 0.00095 19.1 3.3 1 23 616 638 616 638 0.99
17 20 1.3e-05 0.00059 19.8 7.0 1 23 644 666 644 666 0.99
18 20 0.00015 0.0068 16.4 5.3 1 23 672 694 672 694 0.99
19 20 6.7e-05 0.003 17.6 2.2 1 23 700 722 700 722 0.98
20 20 8e-06 0.00036 20.5 7.2 1 23 728 750 728 750 0.99

Sequence Information

Coding Sequence
ATGGATCAATCCGAATTCAAATGCACATCCGAAGGAGGACTTAGCGCTCCTGAAGACAGGATCCCAGAGATTTCTACAGGCAGAATAAGTGTGAAGGATTCACAGGACATTATCCCGGAGGTTGGTAACACTATATTCATAAAGTGTGAGTTAACTGAACCGGAAGCAGAATCTGCATATGACACGGAATTTGCCTCTCATACACCTTGCCATGTGAAAACTGAAATTGGAACTTCtccaagtgaagaaaaaaagtcagtTGAACACTTCAATAGCGCCTCGTGTTCCTCCAATTCTCTCATTGGTCATTCCATCACGATAAAATCGGAAGGAgacaatgaaaatgaaaattggagCGACCAGTTACATACCAGTATTGAGATTAAAAACGAAGACCCTCTTAAGACTGACAGCTATGAATGCACTTACGTAACGGAAGATAGagaacacgattttgaaaatgagattCAAAATCATATGCCAACCACGACATGCAAACCGCTCAGTTGCAATCGTTGCTCGGCCGGTTTTGCGATAAAAGGTACTTTAAAAACGAACATGCGAacacataccggtgagaaaccatttgCTTGCAGCCATTGCCCGGCTTGTTTCGCtagaaaaggaaatttaataCAACACGTGCGAacacataccggtgagaaaccatttacTTGCAGCCAGTGCTCGGCCCCTTTTGCTCAGAAACAACATTTAAAACGCCACATGCGAacacataccggtgagaaaccatttacTTGCAGCCAGTGCTCGGCCCGTTTTGCTCAGAAACAACATTTACAACGCCACATGCGAACACAtaccggtgaaaaaccattcacttgcagccattgctcggcttgtttcgctacaaaaggaaatttaaaacaacaCATGCGAAAACAtaccggtgaaaaaccattcactTGCAGCCATTGCTCGGCTTCTTTCGctagaaaaagaaatttaaaaaaacacatgcGAAAACAtaccggtgaaaaaccattcactTGCAGCCAGTGCTCGGCTTGTTTCGCTGGAAAAGGAGATTTAAAACAACACATGCGAACACATACCAGTGAAAAACCATTCACTTGCAGCCAATGCTCGGTCTCTTTCGCTCAAAAAGGACCGTTATTAAATCACATGCGAacacataccggtgagaaaccattcagatGCAGCCATTGCTCGGTCTGCTTCAtagaaaaaggaagtttaatacggcacatgcgaacacataccggtgaaaaaccattcactTGCAGCCAGTGCTCGGCTTGTTTCGCTGGAAAAGGAGATTTAAAACGGCACATGCGAAGACATACCTGTGAAAAACCATTCACTTGCAGCCAATGCTCGGTCTGTTTTGCTCAAAAAGGAACGTTATTAAATCACATGCGAacacataccggtgagaaaccattcagatGCAGCCATTGCTCGGTCTGCTTCTCTGAAAAAGGAACTTTAAAACGGCACATGCGAacacataccggtgagaaaccattcactTGCAGCCAGTGCTCGGCTTGTTTCGCTGGAAAAGGAGATTTAAAACGGCACATGCGAacacataccggtgagaaaccatttacttgcagtcattgctcggcCCGTTTTGCTCAGACACAACATTTAAAATTCCACATGCGAacacataccggtgagaaaccattcactTGCAGCTATTGCTCGGCTTGTTTCGCTAGAAAAGGAGATTTAAAACAACACTTGCGAACACATACCGGGGAAAAACCATTTACTTGCAGCCATTGCTCGGACTGCTTCGCTCTAAACGCAACTTTAATACGGCACATGCGAACACATACcagtgagaaaccattcagatGCAGCCAATGCTCGGTCTGTTTCGCTCAAAAAGGAACGTTATTAAATCACATGCGAAGacataccggtgagaaaccattcagatgcagccattgctcggtctgcttcactgaaaaaggaactttaaaacggcacatgcgaacacataccggtgagaaaccatttacTTGCAGCCATTGCTCGGACTGCTTCACCAAAAAAGGAGCTTTAATACAACACATGCGAACACATACTGGTGGCAAACCATTTATTTGCAGCCATTGCTCGGCTTGTTTCGctctaaaaggaaatttaatagAACACATGCAGACACATACCGGACAGAAACCATTTACTTGCAGCCATTGCTCGGTCTGCTTCACTCGAAAAGGAAGTTTTATACGACACATGCGAACACATACTGTTGAGGAACCATCAATTACTTGTAGCTATCGCCCTGCACGTTTTGCTGAGTGA
Protein Sequence
MDQSEFKCTSEGGLSAPEDRIPEISTGRISVKDSQDIIPEVGNTIFIKCELTEPEAESAYDTEFASHTPCHVKTEIGTSPSEEKKSVEHFNSASCSSNSLIGHSITIKSEGDNENENWSDQLHTSIEIKNEDPLKTDSYECTYVTEDREHDFENEIQNHMPTTTCKPLSCNRCSAGFAIKGTLKTNMRTHTGEKPFACSHCPACFARKGNLIQHVRTHTGEKPFTCSQCSAPFAQKQHLKRHMRTHTGEKPFTCSQCSARFAQKQHLQRHMRTHTGEKPFTCSHCSACFATKGNLKQHMRKHTGEKPFTCSHCSASFARKRNLKKHMRKHTGEKPFTCSQCSACFAGKGDLKQHMRTHTSEKPFTCSQCSVSFAQKGPLLNHMRTHTGEKPFRCSHCSVCFIEKGSLIRHMRTHTGEKPFTCSQCSACFAGKGDLKRHMRRHTCEKPFTCSQCSVCFAQKGTLLNHMRTHTGEKPFRCSHCSVCFSEKGTLKRHMRTHTGEKPFTCSQCSACFAGKGDLKRHMRTHTGEKPFTCSHCSARFAQTQHLKFHMRTHTGEKPFTCSYCSACFARKGDLKQHLRTHTGEKPFTCSHCSDCFALNATLIRHMRTHTSEKPFRCSQCSVCFAQKGTLLNHMRRHTGEKPFRCSHCSVCFTEKGTLKRHMRTHTGEKPFTCSHCSDCFTKKGALIQHMRTHTGGKPFICSHCSACFALKGNLIEHMQTHTGQKPFTCSHCSVCFTRKGSFIRHMRTHTVEEPSITCSYRPARFAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00202177;
90% Identity
iTF_00202177;
80% Identity
iTF_00202177;