Btab009117.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- -
- Assembly
- GCA_903994105.1
- Location
- NW:64664-88206[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4.1 1.8e+02 2.5 0.1 13 23 207 217 205 217 0.88 2 17 0.00028 0.012 15.6 0.2 1 23 223 245 223 245 0.97 3 17 0.032 1.4 9.1 1.4 5 23 255 273 254 273 0.88 4 17 5.1e-06 0.00023 21.1 3.5 2 23 281 302 280 302 0.97 5 17 0.00028 0.013 15.6 8.5 1 23 308 330 308 330 0.98 6 17 0.0046 0.21 11.7 6.5 1 22 336 357 336 357 0.96 7 17 7.8e-06 0.00035 20.5 8.0 1 23 364 386 364 386 0.98 8 17 0.00031 0.014 15.4 8.6 1 23 392 414 392 414 0.98 9 17 4.7e-05 0.0021 18.0 5.3 1 23 420 442 420 442 0.98 10 17 0.00031 0.014 15.4 8.6 1 23 448 470 448 470 0.98 11 17 1.5e-06 6.5e-05 22.8 6.2 1 23 476 498 476 498 0.98 12 17 0.0058 0.26 11.4 3.7 1 23 504 526 504 526 0.98 13 17 6.4e-07 2.9e-05 23.9 3.3 1 23 532 554 532 554 0.98 14 17 6.4e-07 2.9e-05 23.9 3.3 1 23 560 582 560 582 0.98 15 17 4.7e-05 0.0021 18.0 4.6 1 23 588 610 588 610 0.98 16 17 0.00033 0.015 15.3 8.3 1 23 616 638 616 638 0.98 17 17 0.00037 0.017 15.2 7.3 1 23 644 666 644 666 0.98
Sequence Information
- Coding Sequence
- ATGCCGAAGCTAAAAATCCAACTGGAAGAGCACTCTGCACTCAGCACACCCGAGGACTACAATCCAGTGATTCCACCGAACGATAAAAGTGCGAAGGACCCCCTGGGAGACGTCTCGAGGATTGATTGCACGTGCCCTTCAATGCAGGCCCCACCTGACGCGTGCACCAGCCCGGAGTCGAGCGTTATGCCTGGCAACCCATCTTCCCCGTCCGGAGGAAGTCACCCTCAAGATTCCAACAATACCCGACTTGCATCAGTAGAAGAGACCCAAGACACCTCGCCCTCGTCCATCTTGGATTCGCCCTCCGCTCTTCCCCCCAAAATTGAATGCGAGGATGAAAAAGATTATGCAAGTTGGACCAACCAGCTGCACACGAGCATTGAAATTAAGAGTGAACCCACCCCCCAGACGGATGAGTCAGAACTCAGGTTGGGACGAGGAGGAGGAGAACACGATTTGGAGAATGATATTCGTGATTTTGTCCCGATGACAGCGCGAGTGAAAAGAGAGGATATGAGCTCTCCACTTCCCGACCATTCTCATGAAAGTTGGATTGACCTGTCAGAAACGAATATCGAAATCAAGAGCGAACCCCCTACCCAAACAAACGCGTCGGAATCCAAGTTAGTCGAACATATTCGAACGCACGCTAGTGAGAACCCATTCGCTTGCGGCGAGTGTTCGAgccttttttcttctgaaagcgcTTTAACAACACACATGCAAACGCACGATGGCGAGATACCATTCAATTAcagtcattgctcctcctcATCCAGTATTGAAGATAATTTAAAGAAACACATGCGAACGCATACTGGTAATGAGAAGCTACTTAGTTGCAAtcattgctcctcctctttcagTAGTAAAGACGATTTAAAGAtgcacatgcgaacgcacactggtgagaagccattcagttgcagtcattgcacggcatgcttttctcacaaaaagtctTTAACGGCACATGTTCGCaagcatactggtgagaaatcattcagttgcagtcattgcacagcatgcttttctcacaaaaagtctTTCACGGAACATGTTCGCACatatactggtgagaaaccattcagttgcaatcATTGCTCCTCTTCTTTCAGTAGAAAACACAATTTAAAGATGCACATGcgaacgcatactggtgagaaaccattcagttgcagtcattgcacagcatgcttttctcacaaaaagtctttaacggaacatgttcgcacgcataccggtgagaaaccattcagttgcaatcattgctcctcctctttcagtattaaaaatagtttaaagaagcacatgcgaacgcacactggtgagaaaccattcagttgcagtcattgcacggcatgtttttctcacaaaaagtctttaacggaacatgttcgcacgcatactggtgagaaaccattcagttgcagtcattgcacggcatgctttTCTGACAAAAGTAATTTATCAAAGCACATACggacgcatactggtgagaaaccattcagttgcagttattgctcctcctctttccttatgaaaattcatttaaagattcacatgcgaacgcatactggtgagaaaccattcagttgcagtcattgctccgcTTCTTTTAGTAGGAAAGGCACTTTAAAGGTGCACATGcgaacgcatactggtgagaaaccattcagttgcagtcattgctccgcTTCTTTTAGTAGGAAAGGCACTTTAAAGGTGCACATGcgaacgcatactggtgagaaaccattcagttgcaatcattgctcctcctctttcagtattaaaaacaatttaaagatgcacatgcgaacgcacactcgtgcgaaaccattcagttgcagtcattgcacggcatgctttTCTCACAAAAGGTCTTTAACGGCACATGTTCGGAAGCATActggtgaaaaaccattcagttgcagtcattgcacggcatgctttGCTCAAAAGCATACTTTGACGGAACATGTTCGCACGCATACTGGttag
- Protein Sequence
- MPKLKIQLEEHSALSTPEDYNPVIPPNDKSAKDPLGDVSRIDCTCPSMQAPPDACTSPESSVMPGNPSSPSGGSHPQDSNNTRLASVEETQDTSPSSILDSPSALPPKIECEDEKDYASWTNQLHTSIEIKSEPTPQTDESELRLGRGGGEHDLENDIRDFVPMTARVKREDMSSPLPDHSHESWIDLSETNIEIKSEPPTQTNASESKLVEHIRTHASENPFACGECSSLFSSESALTTHMQTHDGEIPFNYSHCSSSSSIEDNLKKHMRTHTGNEKLLSCNHCSSSFSSKDDLKMHMRTHTGEKPFSCSHCTACFSHKKSLTAHVRKHTGEKSFSCSHCTACFSHKKSFTEHVRTYTGEKPFSCNHCSSSFSRKHNLKMHMRTHTGEKPFSCSHCTACFSHKKSLTEHVRTHTGEKPFSCNHCSSSFSIKNSLKKHMRTHTGEKPFSCSHCTACFSHKKSLTEHVRTHTGEKPFSCSHCTACFSDKSNLSKHIRTHTGEKPFSCSYCSSSFLMKIHLKIHMRTHTGEKPFSCSHCSASFSRKGTLKVHMRTHTGEKPFSCSHCSASFSRKGTLKVHMRTHTGEKPFSCNHCSSSFSIKNNLKMHMRTHTRAKPFSCSHCTACFSHKRSLTAHVRKHTGEKPFSCSHCTACFAQKHTLTEHVRTHTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00201892; iTF_00201893;
- 90% Identity
- -
- 80% Identity
- -