Btab009118.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- -
- Assembly
- GCA_903994105.1
- Location
- NW:41218-43950[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 6.8 3e+02 1.8 0.0 13 23 207 217 205 217 0.87 2 17 0.0001 0.0047 16.9 0.5 1 23 223 245 223 245 0.98 3 17 0.38 17 5.7 0.3 5 22 255 272 254 272 0.86 4 17 5.2e-06 0.00023 21.0 3.5 2 23 281 302 280 302 0.97 5 17 0.00011 0.005 16.8 8.1 1 23 308 330 308 330 0.98 6 17 0.00038 0.017 15.2 7.3 1 23 336 358 336 358 0.98 7 17 0.00011 0.005 16.8 8.1 1 23 364 386 364 386 0.98 8 17 0.00013 0.006 16.6 6.8 1 23 392 414 392 414 0.98 9 17 4.5e-06 0.0002 21.2 5.5 1 23 420 442 420 442 0.98 10 17 1.3e-05 0.00058 19.8 7.8 1 23 455 477 455 477 0.98 11 17 0.00013 0.006 16.6 6.8 1 23 483 505 483 505 0.98 12 17 4.5e-06 0.0002 21.2 5.5 1 23 511 533 511 533 0.98 13 17 8.1e-06 0.00036 20.4 6.4 1 23 539 561 539 561 0.98 14 17 0.00017 0.0075 16.3 5.0 1 23 567 589 567 589 0.98 15 17 6.8e-06 0.0003 20.7 5.4 1 23 595 617 595 617 0.98 16 17 0.0014 0.062 13.4 6.3 1 23 623 645 623 645 0.98 17 17 0.0016 0.072 13.2 5.5 1 23 651 673 651 673 0.98
Sequence Information
- Coding Sequence
- ATGCCGAAGCTAAAAATCCAAGTGGAAGAGCACTCTGCACTCAGCACACCTGAGGACTACAATCCAGTGATTCCACCGAACGATAAAAGTGCGAAGGACCCCCTGGGAGACGTCTCGAGGATTGATTGCACGAGCCCTTCAATGCAGGCCCCACCTGAAGCGTGCACCAGCCCGGAGTCGAGCGTTATGCCTGGCAACCCATCTTACCCGTCCGGAGGAAGTCACCCTCAAGATTCCAACAATAGCCGACTTGCATCAGTAGAAGAGACCCAAGACACCTCGCCCTCGTCCATCTTGGATTCGCCCTCCGCTCTTCCCCCCAAAATTGAATGCGAGGATGAAAAAGAATATGAAAGTTGGACTAACCAGCTGCACACAAGCATTGAAATTAAGAGTGAACCCACTCCCCAGACGGATGAGTCAGAACTCAGGTTGGGACGAGGAGGAGAAGAACACGATTTGGAGAATGATGGTCGTGATTTTGTCCCGATGACAACGCGAGTGAAAAGAGAGGACATGAGCTCTCCACTTCCCGACCATTCTCATGAAAGTTGGATTGACCTGTCAGATACGAATATCGAAATCAAGAGTGAACCCCCTACCCAAACAAACGCGTCGGAATCCGAGTTCGTCGAACATATTCGAACGCACGCTAGTGAGAACCCATTCACTTGCGGCGAGTGTTCGAgccttttttcttctgaaagcgcTTTAACAACACACATGCAAACGCACGATGGCGAGATACCATTCAATTAcagtcattgctcctcctcATCCAGTATTGAAGATAATTTAAAGAAACACATGCGAACGCAAACTGGTAATGAGAAGCTACTTAGTTGCAAtcattgctcctcctctttcagTAGTAAAGACGATTTAAAGAtgcacatgcgaacgcacactggtgagaagccattcagttgcagtcattgcacggcatgcttttctcacaaaaagtctTTAACGGCACATGTTCGCacacatactggtgagaaaccattcagttgcagtcattgcacggcatgctttGCTCAAAAACATACTTTAACGGAACATGTTCGCACGCACACTGGTGAggaaccattcagttgcagtcattgcacggcatgcttttctcacaaaaagtcATTAACGGCACATGTTCGCacacatactggtgagaaaccattcagttgcagtcattgcacggcatgctttGCTCAAAAACATACTTTAACGGCACATGTTCGCacacatactggtgagaaaccattcagttgcaatcattgctcctcttctttcagcagaaaagactatttaaagatgcacatgcgaacgcacactggtgagaaaccattcagttgcagtgagaaaccattcagttgcaatcattgctcctcctctttccgttcgaaaattcatttaaagaggcacatgcgaacgcatactggtgagaaaccattcagttgcagtcattgcacggcatgctttGCTCAAAAACATACTTTAACGGCACATGTTCGCacacatactggtgagaaaccattcagttgcaatcattgctcctcttctttcagcagaaaagattatttaaagatgcacatgcgaacgcacactggtgagaaaccattcagttgcagtcattgcacagCATGCTTTTCTAATACAAGTAATTTATCAAAGCACATCCggacgcatactggtgagaaaccattcagttgcagtcactgcacggcatgctttgctcaaaaacaaactttaacggaacatgttcgcacgcatactggtgagaaaccattcagttgcaatcattgctcctcttctttcagcagaaaagagtatttaaagatgcacatgcgaacgcacactggtgagaaaccattcagttgcagtcattgttCCTCCTCTTTCAGCAGGAACGATAATTGCATGGTacacatgcgaacgcacactggcgagaaaccattcagttgcagtcattgttCGGCTtacttctctaaaaaaataactttcaagAGACATTTGCGAATGCATTCTGGCGAAAAACCCTAG
- Protein Sequence
- MPKLKIQVEEHSALSTPEDYNPVIPPNDKSAKDPLGDVSRIDCTSPSMQAPPEACTSPESSVMPGNPSYPSGGSHPQDSNNSRLASVEETQDTSPSSILDSPSALPPKIECEDEKEYESWTNQLHTSIEIKSEPTPQTDESELRLGRGGEEHDLENDGRDFVPMTTRVKREDMSSPLPDHSHESWIDLSDTNIEIKSEPPTQTNASESEFVEHIRTHASENPFTCGECSSLFSSESALTTHMQTHDGEIPFNYSHCSSSSSIEDNLKKHMRTQTGNEKLLSCNHCSSSFSSKDDLKMHMRTHTGEKPFSCSHCTACFSHKKSLTAHVRTHTGEKPFSCSHCTACFAQKHTLTEHVRTHTGEEPFSCSHCTACFSHKKSLTAHVRTHTGEKPFSCSHCTACFAQKHTLTAHVRTHTGEKPFSCNHCSSSFSRKDYLKMHMRTHTGEKPFSCSEKPFSCNHCSSSFRSKIHLKRHMRTHTGEKPFSCSHCTACFAQKHTLTAHVRTHTGEKPFSCNHCSSSFSRKDYLKMHMRTHTGEKPFSCSHCTACFSNTSNLSKHIRTHTGEKPFSCSHCTACFAQKQTLTEHVRTHTGEKPFSCNHCSSSFSRKEYLKMHMRTHTGEKPFSCSHCSSSFSRNDNCMVHMRTHTGEKPFSCSHCSAYFSKKITFKRHLRMHSGEKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00201894;
- 90% Identity
- -
- 80% Identity
- -