Btry000743.1
Basic Information
- Insect
- Bactrocera tryoni
- Gene Symbol
- Mbd2
- Assembly
- GCA_016617805.2
- Location
- NC:12612325-12614557[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.8e-26 2.1e-22 78.1 0.0 1 73 7 74 7 78 0.94 2 2 0.00014 0.37 10.1 0.0 29 73 218 273 203 277 0.81
Sequence Information
- Coding Sequence
- ATGAATTCGAGTATTACAATTGAACGTAAGCGCGTAGATTGCAACTCGTTGCCAAAAGGTTGGCAAAGAGAGGAAGTTCTTCGCAAGTCTGGTATATCAGCTGGCAAAGTCGACGTCTACTATTACAGCCCGACcggtaaaaaaattgaaagcaaGCCACAATTAGCACGATGTCTGGGTGATGCCATTGACATTGGAGCATTTGATTTTCAAAGCGGCAAATTCGTACGTCATATGCCACCACCATCTATTTCGCTTTTCCGTTGCAGTAGCACAAGCAATCATAGCAGCGGACCTAGTGGCGGTGCAAGTGGAAATGATAATACTTCAAtgccgccaccgccaccacaATACAGTGGCGGTAACACTTTATCCCTATCCGTATGTTCCTCTCCAAATTCTTCACAATCAACTATTACAAATGCCAACATACTACAACCActaatgccaacaacaacatctcATACATTAAAGCGCAAATTCAAAGCGCAGTCCCAATCCCAATCTCAAATTCAGAACCAGTCACAGACCCATCAGTTACAAGGCATGCCTTCAAATGTCATTAGTAGCGGTTGTGCCCCATCGAGCGCATGTGGTGCTGCAACTACATCAGCAGCGAATTCACGCCAGCAATTAGAATTCAGTCGCACACCACGCACAGATGCCTCTCTGGTGCCACCTATACGACAGACTGCATCGATTTTCAAACAGCCAGTTACTGTAATTCGAAATCATGAGCCTACTAAAGTCCGTAATGACAACACTAAACAGGCAAGCGGCCAAGAGAAACCAAAGCAAATGTTTTGGGAGAAAAGATTGGAAGGTTTACGTGCATGCCATCCTTCCGGTGAAGAGTTTGATGATATTGTCCTACCGAAGAGTATACGCACCATCGGACCGAATGTTAATGAGCAAACAGTGCTACAATCATTGGCTACAGCTCTTCATGTGCTTAATGTACCAGTAATGGGTCAAGCATCCACAAAGACTGAGATGAATAAAAATGCAACAGCATTTTTGAATCCTGAACAACCGCTTATGCAAGCAGTTTTAGTGTCGGATGACGACATACGGCGACAAGAGGACCGAGTTAATGTGGCTAGAAAGAAATTGCAGGATGCGCTTAAAGCTTGA
- Protein Sequence
- MNSSITIERKRVDCNSLPKGWQREEVLRKSGISAGKVDVYYYSPTGKKIESKPQLARCLGDAIDIGAFDFQSGKFVRHMPPPSISLFRCSSTSNHSSGPSGGASGNDNTSMPPPPPQYSGGNTLSLSVCSSPNSSQSTITNANILQPLMPTTTSHTLKRKFKAQSQSQSQIQNQSQTHQLQGMPSNVISSGCAPSSACGAATTSAANSRQQLEFSRTPRTDASLVPPIRQTASIFKQPVTVIRNHEPTKVRNDNTKQASGQEKPKQMFWEKRLEGLRACHPSGEEFDDIVLPKSIRTIGPNVNEQTVLQSLATALHVLNVPVMGQASTKTEMNKNATAFLNPEQPLMQAVLVSDDDIRRQEDRVNVARKKLQDALKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01045464;
- 90% Identity
- iTF_00190670;
- 80% Identity
- -