Basic Information

Gene Symbol
lov
Assembly
GCA_016617805.2
Location
NC:70241354-70269776[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.7 3.4e+03 -2.5 0.1 14 23 11 20 7 21 0.61
2 2 5.5e-18 1.1e-14 53.5 0.0 2 44 878 920 877 921 0.94

Sequence Information

Coding Sequence
ATGTTAACGCAGCCACCGCACATGGTGAAACGACGCAAACTGTCATTGTCACAAGCGCAGAGCACAGCAACGCCAACCGCAACAGCAGTCACCACAACAACGGCCGCGTCCATGGACAGCGCGGCAATTGCAACCACAACGCCGCCGAACACACCGCCCACACCAGCGCCGCTCAACATGATGATGACCACAGCACGTAATCACAACACACAAAACAACACGAGCGACGGCAACGGCAGCGACAGTGCGAACAACGGCAAAGACTGCAACATGGACAACACAACGTGTACTTTGATAAGCGCCACCACAGCACCCACGCACACGACCACCGCCATGGCCGGCGCCTTATTGAGCAGCAGCCAGCACACAGCCGCCTCGAATAGCGCCACAGcagctgctgttgctgccgctgcGGTGGCAGCGGTGACAGCTGCAGGCGCCAATGCAGCGCCAACAAACGCACTGGCTCCCAGTAATGCCACCGTCAGCGCTGCAAGCAGCAATGGCGTTGTGCCAGATCACTACAGCCTGCGTTGGAACAACCATCAAAATCATATATTGCGCGCTTTCGATGCGCTACTACAGACCAAGACGCTGGTAGATGTGACGCTGGTGTGCGCCGAGACGAGCATACATGCGCACAAAATGGTGCTGTCGGCGTGTTCGCCCTTCTTTCAACGCGTCTTCGCCGAAACGCCGTGCAAGCATCCCGTCATTGTGCTGAAGGACTTTCAGGGTTGGGTGGTGCAAGCGATCGTGGACTTTATGTATCGTGGCGAGATCAGTGTGCCACAAGAACGACTGCAGACTTTGATACAAGCAGGCGAATCACTGCAGGTGCGCGGTTTGGTTGAAAGTTCGGTACCAGAGCATACACCTACACCGGCAGCTTCGCCGGATGATTTTGGCATGATCGATACGTCGTTGATGTCGCCCGAACTGGAGCGTTGCTCGAGCTTCGACGATGAATCGCCGTCAATGGTAACAGCTGGCTCGAAAGTTATATTGCCATCGCGGCTATTCGGTTCGTCTGCGCGTCGGGAGCGTGAACGTGAACGCAAACGTGAGCGCGCACTCGAACGCGAATTGGAACGTGAAGCCGAAAGCGATCAGGACCTGCCACTGGATACGAGTATCAACTCAGATGTTTGCACGTCGCCTATGCCAAGACGTAAACAGGCACGTCCGCGTCGTCGCTCCGGTGATCTTTCACTCGAAATGTTAAACGAATCAGCTACATCGGCACCGGTAGAAGAGTCGCCACGTAAACAACCCCTGCCTTTAACACTGGATGAGAAGTTGGAGCAGGCTCAAGCAGAGCAGTTAGAGGCTTTGAAAACTGTGATCAAAACTGAGCTGGCTGAACCGATGGACGAGGACGAGGGTGCACGCCGCGATGACAGCGGCAATGGCAATGACAGTCAAGTGAATGACGATTCGCACGAAAAGCCCTCGAACGCTTATCAATCCAGCGTAGATCAACAGCATAATTCGCGCACGGATGAGATACTTTCGCCAGCTCCATTGAATGTGGCACACTCCATGGAGGTCGAAGAGGAGGAACAAGAAGATGAAAATGATGATGAACATGACAATGATCATGAGGTAATACCGGATGCTGAAGACATCGAAGAACTTATCAACGCCACCAATGAGCTGCGCCGCAAGTCCTTATCAAATCTCTCGGACGGTCCCGAAGATCTCTGCACAACGAAAAAAGACCAAAATGCCGTAAATGGCAGTCACTCGGCCTCCGACGTCGACAGCAGTCcgaataataataacaacaataataaacttAACAATAATAATCGCATTGTATTGTCGCTCAAAGATATACGGCAACTGAATAAGCCCTCATCCTCCTCCACACCGAACTCATCGAACAATATGCACCCTTTTGCGACGGCCAGCCTACGCGATCTGCGACTGGATCGTGCCGTCAGCACCGCAGCCGAAAATCAATGCAAAATGGACGCTCTAGAAGCGCAAATGCATGCCGCCGCCGCAGCCGCCGCGGTAGCTGCAGCCAATGGCGAGAATCCATTTCAACATATGGAACATCAGATGGATCTGTCGCTGGCTGCCGCCGCAGCAGCCGCCGCTGTGTCACATCAACAGTCACGCGAACGTGATCAGGCACTACAACGGGAACAACGTGAATTACAAGAGCAACACAATGCCTATGCGAACAGCATACTTGGACAGATGGGTATGTCGGGCATGCCGCCTTTCGGTGGACCCGGTGGTCCAGGTGGACCAGCACCACATGAACGTTTGGAGGAGAGTATGAATcggttgagcaaagaatttgcgcCAAGTTCACCAATGAGTCTGCCCACACACTTCAATCCACCTGATGGACCGCCACATCCACCCTCGCCACTACCATTTCCGGGTATGTCTTCGGCGCTGACGTTAACGCCGCCGCACATGTTCGGTTTGGACTCACCGCTCGGTCTCTTTCCACCAGGCATTGACCCAGGCAAACTCTATAACCCACTAATGGAAATGTCCGATCCACGTGGCATGCCCAGCGATCATCCGCCGCCCTTTCTCAAAGGCAAGAAAATACCACGCCCAAAAGGACAACACTCTGCACCGCGCGGCGGTCCGCCACGTTCGTGGACGAATTCCGAGCTCACCGAGGCACTGCAGCATGTCTGGAACAAGAAAATGACCACCTCACAGGCGTCGCGCATTTTCGGCATACCCTACAACTCGCTGTTGATGTACGTGCGCGGCAAGTATGGCAAAAGCCTGAAACTGGAACAGCTGCGCAAGGACTGTATTAGCGGTCCACCGCTTGAATTGCTGCAACTGGGACTGGGCGGCGGTTCGGGTGGCGGTAAGAATAAAGAAGGCAAAGATAAATCAGCACATCGCAACTCAGAGAACTCAACGAAAAATAATAACGAACTCGACTTGGGCATACCGCTGCCGGGTATGGTGCCTGGCGGTAATGGACCAAGCGGGCCGCGCAGCGCCAGTTCTGAACCCGATTTGATTGGCGGACCCAATTCGCTCTTCGGTCCATTTCCCGGCGCTTTCTATCCCGACTTCCCCGGCGGCTTTCCTGGCCTGCCACTAAGCATGCTCAATCTACTCCCACCCACGGATCGTCATCAGCCACACGGCGCTGGCATGACGGCACTACATCATCTCGGCATGGATGAGGACTGCAAATCGGATCGTTCAAAACAATCCTCTTCGCTGGGTGATGACGATTTTGCTGCGAACGCCGCAGCATTAGCCGCCGGCGTACAACCGCTCGCGCTCAATCGCAACGAAAACGAACGACGCAGCGCCAATGACATACTCGCAAATGCCGGCGCGATAGGCGCGCCAcaaccaccaccaccgccgcccATGAGCGCTGCCGTCGGCGGCGGTGGCCAGCAAAACGGCGGTATGCAAGATTGA
Protein Sequence
MLTQPPHMVKRRKLSLSQAQSTATPTATAVTTTTAASMDSAAIATTTPPNTPPTPAPLNMMMTTARNHNTQNNTSDGNGSDSANNGKDCNMDNTTCTLISATTAPTHTTTAMAGALLSSSQHTAASNSATAAAVAAAAVAAVTAAGANAAPTNALAPSNATVSAASSNGVVPDHYSLRWNNHQNHILRAFDALLQTKTLVDVTLVCAETSIHAHKMVLSACSPFFQRVFAETPCKHPVIVLKDFQGWVVQAIVDFMYRGEISVPQERLQTLIQAGESLQVRGLVESSVPEHTPTPAASPDDFGMIDTSLMSPELERCSSFDDESPSMVTAGSKVILPSRLFGSSARRERERERKRERALERELEREAESDQDLPLDTSINSDVCTSPMPRRKQARPRRRSGDLSLEMLNESATSAPVEESPRKQPLPLTLDEKLEQAQAEQLEALKTVIKTELAEPMDEDEGARRDDSGNGNDSQVNDDSHEKPSNAYQSSVDQQHNSRTDEILSPAPLNVAHSMEVEEEEQEDENDDEHDNDHEVIPDAEDIEELINATNELRRKSLSNLSDGPEDLCTTKKDQNAVNGSHSASDVDSSPNNNNNNNKLNNNNRIVLSLKDIRQLNKPSSSSTPNSSNNMHPFATASLRDLRLDRAVSTAAENQCKMDALEAQMHAAAAAAAVAAANGENPFQHMEHQMDLSLAAAAAAAAVSHQQSRERDQALQREQRELQEQHNAYANSILGQMGMSGMPPFGGPGGPGGPAPHERLEESMNRLSKEFAPSSPMSLPTHFNPPDGPPHPPSPLPFPGMSSALTLTPPHMFGLDSPLGLFPPGIDPGKLYNPLMEMSDPRGMPSDHPPPFLKGKKIPRPKGQHSAPRGGPPRSWTNSELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPLELLQLGLGGGSGGGKNKEGKDKSAHRNSENSTKNNNELDLGIPLPGMVPGGNGPSGPRSASSEPDLIGGPNSLFGPFPGAFYPDFPGGFPGLPLSMLNLLPPTDRHQPHGAGMTALHHLGMDEDCKSDRSKQSSSLGDDDFAANAAALAAGVQPLALNRNENERRSANDILANAGAIGAPQPPPPPPMSAAVGGGGQQNGGMQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01045392;
90% Identity
iTF_01562816;
80% Identity
iTF_00193674;