Bole002772.1
Basic Information
- Insect
- Bactrocera oleae
- Gene Symbol
- Mbd2
- Assembly
- GCA_001188975.4
- Location
- LGAM02038715.1:4968114-4970364[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.4e-26 3.5e-22 78.0 0.0 1 73 7 74 7 78 0.94 2 2 0.00016 0.67 9.8 0.0 30 72 218 271 201 276 0.79
Sequence Information
- Coding Sequence
- ATGAATTCGAGTATTACAATTGAACGTAAGCGCGTAGATTGCAACTCGTTGCCAAAAGGTTGGCAAAGAGAGGAAGTTCTTCGCAAGTCTGGTATATCAGCTGGCAAAGTCGACGTCTACTATTACAGCCCGACcggtaaaaaaattgaaagcaaGCCACAATTAGCAAGATGTCTGGGTGATGCAATTGACATTGGAGCATTTGATTTTCAAAGCGGCAGATTCGTGCGTCACATGCAACCACCATCTATTTCGCTTTTCCGTTGCAGTAGCACAAGTAATAGCAGCGGAACTGGTGGCGGTGCAAGTGGAAATGACAATACTTCAATGCCGCCACCGCCACCACAGTACAGTGGTGGTAACACTTTATCCCTATCCGTGTGTTCCTCTCCAAATTCTTCACAATCAACTATAACAAATGCCAACATACTACAACCactaatgccaacaacaacatctcATACATTAAAGCGCAAATTCAAAGCGCAGTCCCAATCCCAATCTCAAATTCAGAATCAGTCACAGACCCATCAGTTACAAGGCATGCATACAAATGTCATTAGTAGCGGTTGTGCCCCATCGAGCGCATGTGGTGCTGCAACTACATCAGCAGCGAATTCACGTCAGCAATTAGAATTCAGTCGCGTACCACGCACAGATGCCTCTCTGGTGCCACCTATACGACAGACCGCATCGATTTTCAAACAACCGGTTACTGTAATTCGGAATCATGAGCATACTAAAGTCCGTAATGACAACACAAAACAGACAAGCGGCCAAGAAAAACCAAAGCAAATGTTTTGGGAGAAACGATTGGAAGGGTTACGTGCATGCCATCCTACCGGTGAAGAGTTTGATGATATTGTATTACCGAAGAGTATACGCACCATCGGGCCGAATGTTAATGAGCAAACAGTACTACAATCATTGGCTACAGCTCTGCATGTACTTAACGTACCTGTAATGGGTCAAGCATCCACAAAGACTGAGATGAATAAAAATGCAACAGCATTTTTGAATCCCGAACAACCGCTTATGCAAGCAGTTTTAGTGTCGGATGACGACATACGGCGACAAGAGGATCGAGTTAATGTGGCTAGAAAGAAATTGCAGGATGCGCTTAAAGCTTGA
- Protein Sequence
- MNSSITIERKRVDCNSLPKGWQREEVLRKSGISAGKVDVYYYSPTGKKIESKPQLARCLGDAIDIGAFDFQSGRFVRHMQPPSISLFRCSSTSNSSGTGGGASGNDNTSMPPPPPQYSGGNTLSLSVCSSPNSSQSTITNANILQPLMPTTTSHTLKRKFKAQSQSQSQIQNQSQTHQLQGMHTNVISSGCAPSSACGAATTSAANSRQQLEFSRVPRTDASLVPPIRQTASIFKQPVTVIRNHEHTKVRNDNTKQTSGQEKPKQMFWEKRLEGLRACHPTGEEFDDIVLPKSIRTIGPNVNEQTVLQSLATALHVLNVPVMGQASTKTEMNKNATAFLNPEQPLMQAVLVSDDDIRRQEDRVNVARKKLQDALKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01045464;
- 90% Identity
- iTF_00190670;
- 80% Identity
- -