Bmin016642.1
Basic Information
- Insect
- Bactrocera minax
- Gene Symbol
- Mbd2
- Assembly
- None
- Location
- JAPVRH010007909.1:63480-65382[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-25 8.8e-22 76.8 0.0 1 73 7 74 7 87 0.94 2 2 8.9e-05 0.39 10.6 0.0 27 71 216 271 205 277 0.76
Sequence Information
- Coding Sequence
- ATGCATTCGGGTATTACAATTGAACGTAAACGCGTAGATTGCAACTCGTTGCCAAAAGGTTGGCAAAGAGAGGAAGTTCTTCGCAAGTCTGGTATATCAGCTGGTAAAGTCGACGTCTACTATTACAGCCCGAAcggtaaaaaaattgaaagcaagCCACAATTAGCACGATGTCTTGGTGATGCTATTGACATTGGAGCGTTTGACTTTCAAAGCGGCAAATTCGTGCGTCATATACCACCACCATCTATTTCGCTTTTCCGTTGCAGTAGCACAAGTAATAATAGCAGCGGGACTAGTGGCGATGCAAGTGgaaatgataatttttcaatgccaccaccgccaccacaATACAGTGGCGGTAACACTATATCCCTACCCTTGTGTTCCTTTCCAAATTCTTCACAATCCCCTATAACAAATGCCAATATTCTACAACCActaatgccaacaacaacatctcATACATTAAAGCGCAAATTCAAGGCGCAGTCCCAATCCCAATCTCAAATTCAGAATCAGTCACAGACCCATCAGTTACAAGGCATGTGCACAAATGTCATTAGTAGCGGTTGTGCCCCATCGAGCGCATGTGGTGCTGCAACTACATCAGCAGCCAATTCACGTCAGCAATTAGAATTCAGTCGCGCACCACGCACAGATGCCTCTCTGGTGCCACCCATACGGCAGACCGCATCGATTTTCAAACAACCAGTTACTGTAATTCGAAATCATGAGCATACAAAAGTACGCAATGACAACATTAAACAGACAAGCGGCCAAGAGAAACCAAAGCAGATGTTTTGGGAGAAAAGATTGGAAGGTTTACGTGCATGCCATCCAACAGGTGAAGAGTTTGATGATATTGCACTACCGAAAAGTATACGTGGTATCGGGCCGAATGTTACTGAGCATACAGTGCTACAATCATTGGCTACAGCTCTGCATGTGCTTAACATACCCGTAATGGGCCAATCATCCACAAAGACTGAGAtgaataaaaatgcaacagCATTTTTAAATGCCGAACAACCGCTTATGCAAGCAGTTTTAGTGTCGGATGATGACATACGACGACAAGAGGATCGAGTTAACGTGGCTAGGAAGAAATTGCAGGATGCGCTTAAAGCTTGA
- Protein Sequence
- MHSGITIERKRVDCNSLPKGWQREEVLRKSGISAGKVDVYYYSPNGKKIESKPQLARCLGDAIDIGAFDFQSGKFVRHIPPPSISLFRCSSTSNNSSGTSGDASGNDNFSMPPPPPQYSGGNTISLPLCSFPNSSQSPITNANILQPLMPTTTSHTLKRKFKAQSQSQSQIQNQSQTHQLQGMCTNVISSGCAPSSACGAATTSAANSRQQLEFSRAPRTDASLVPPIRQTASIFKQPVTVIRNHEHTKVRNDNIKQTSGQEKPKQMFWEKRLEGLRACHPTGEEFDDIALPKSIRGIGPNVTEHTVLQSLATALHVLNIPVMGQSSTKTEMNKNATAFLNAEQPLMQAVLVSDDDIRRQEDRVNVARKKLQDALKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01045464;
- 90% Identity
- iTF_00190670;
- 80% Identity
- -