Basic Information

Insect: Bactrocera dorsalis
Gene Symbol: -
Assembly: GCA_000789215.2
Location: NW:616023-620987[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.7 2.1e+02 2.2 0.1 1 18 93 110 93 110 0.90

2 12 0.32 18 5.5 2.1 1 21 217 237 217 238 0.90

3 12 0.00029 0.016 15.1 2.4 1 23 287 309 287 309 0.96

4 12 1.9e-06 0.00011 22.0 1.1 2 23 330 351 330 351 0.98

5 12 0.0092 0.52 10.4 0.8 1 23 377 398 377 398 0.90

6 12 0.00048 0.027 14.4 2.8 1 23 404 426 404 426 0.98

7 12 4.9e-05 0.0028 17.5 0.7 1 23 447 469 447 469 0.97

8 12 6.6e-07 3.7e-05 23.4 0.9 1 23 475 497 475 497 0.96

9 12 0.00011 0.0063 16.4 2.1 1 23 503 525 503 525 0.99

10 12 4e-07 2.3e-05 24.1 0.8 1 23 531 553 531 553 0.99

11 12 4.3e-06 0.00024 20.9 0.3 1 23 557 579 557 579 0.98

12 12 0.00034 0.019 14.9 0.0 1 23 591 614 591 614 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.7	2.1e+02	2.2	0.1	1	18	93	110	93	110	0.90
2	12	0.32	18	5.5	2.1	1	21	217	237	217	238	0.90
3	12	0.00029	0.016	15.1	2.4	1	23	287	309	287	309	0.96
4	12	1.9e-06	0.00011	22.0	1.1	2	23	330	351	330	351	0.98
5	12	0.0092	0.52	10.4	0.8	1	23	377	398	377	398	0.90
6	12	0.00048	0.027	14.4	2.8	1	23	404	426	404	426	0.98
7	12	4.9e-05	0.0028	17.5	0.7	1	23	447	469	447	469	0.97
8	12	6.6e-07	3.7e-05	23.4	0.9	1	23	475	497	475	497	0.96
9	12	0.00011	0.0063	16.4	2.1	1	23	503	525	503	525	0.99
10	12	4e-07	2.3e-05	24.1	0.8	1	23	531	553	531	553	0.99
11	12	4.3e-06	0.00024	20.9	0.3	1	23	557	579	557	579	0.98
12	12	0.00034	0.019	14.9	0.0	1	23	591	614	591	614	0.96

Sequence Information

Coding Sequence: ATGGCAGcttataaaaacataaaaatggaaaatggttTGCATGAAGATGAATATACTGATGCCATGTCAGCGAACAACTTAACAGACCatgttgaatattttgaatatgaagaTAATATTGGCACTGGTTATGAACATGAATCATTGATTGaatatattgaagaagatgATGTACAAAATGGTAATTATGTCGAAAACGAAACTCTGGAGGAGCAAGTGAAAACACACACTTTATCTATAAAGCACTTGCAATTCGATGGTCAATCTCAGGAAATATATCGTTGCTTAGAGTGTGCCATAGATTTTGTTACTCTCGAGGACTTCACAAAAGTACATCaagaaatgcagaaaaaattatctaaTAAAGCTTCAACAAATATTAGTACTAACGATACACTTCAGAATGAACAAGTCAAGGAAGATCAAGTTATTGAAAACTCAAACGGCGGTTGGCTGATTATAAAAGAAGAGCATATTATTGTGGATGAAAATGAAACTAAAGAGTTGGGTGATTACTTAGAAATGAGTGAGGATATGATTGAACATACGAATTTTGGCAAGGAAAATAACGATATCGCCACCGATACCCTTTTACATGTTAAAGAAGAAAAGCAATCCATCACCGATGAAGAAGATGATGgggagaaatatttttgttgtgattgcCAACTGGTGTTTAGTGATTTAGAAAAAGCCGAGCAACATGTTTGTAGCGCCATAAATAGTAGCACAGTCAAACAGGAAGATGCAGATAACGTTGTTGAGCAAGAAGAATATGGCAATGATATACGGTTATATCTTGAAGAACAGAAGCAAACGTTGGACACATCGAAAAAAAGCCAAAGCAATGAAGTACAACATCATTGTGCCGAATGTGATAAGACATTTAATTCTCTGCAAGGCTTACAAATACATAACCGTATTCACAAAACAAAAGatattaaaacacaaaatgatTCGTTTAGTGTAGTAGAATTGAAAAAACCAACATGTCCGATTTGCAATACTAATTTCAGTTCATACAAAAATCTTAAGTTACACATGAAAATTCATGATGCACAGCAATTGAGAACAATAGAGCAAGCATTGCCGGCTGGTGCCAAAACGCAATATAAGGATATGAACAAGTTCTTCTGCGAGATATGCAATAAGAGttttgaacAGAATCTACTTGGTATACATAAAAACATGCATCAACAATCCACAGAGTTTAATTGTGGTATTTGCAATCGtcactttgaaaataaaactagcTATGACatgcatatgcaaatgcatgcTGACAAACCCGCCAAACCACGTAAACAACAAATCAAGCAAACGGATAGTAGTGGTCGGTTTGCTTGTCAATACTGTGGTCGAACGTTCCAGCGGCCGTATGAAAAAGTGCGCCATGAGCGTGTACACACCGGCGAAAAACCACATGCTTGCGAAGTGTGCGGCAAAACTTTTCGCGTTTCTTATTCGCTGATACTACACCTGCGCACGCACACCGATATACGACCATACGTATGCGCCACTTGCAATAAACGTTTCAAGTCGCAGCCTGTTTATGCTCATCATCTACGCACTCACGATGCAGAACGTGCATACAAATgtgaaatttgttcaaaatcgTTTCGAACTTCAGTGCAGCTTTCGGCGCACAGGAATATACATTCGAAACCTTACAATTGTCCAGTATGTAATCGTCCCTTTGCTTCATTGTATTCGGTGAAAATACACATGAAAACACACAATAAACTTAACCGTTCCGGTGATACTACCAAATACAGTTGCTATGTTTGTGGTGCGGAATATGCGCGAGTTTCTGCATTACGAATACATATGAAGGATTTACATCTTATCGATTTTGATACGAACCGTTCGTTGGATTTAGATGATATAATATCGGCAGAGGATCAAAACTCACAATCTCAGCACGACACAGATTGCAACGAAGATGAGCAAGAAGTTGATAATGAGGCTGCCGTTTTGATAGCAGCGGCTGCAGAAGCCGATTGCGCAGCCTATATAGAAGCTGCGACAGCGCATACGCCTGATCACACATCCACAGGACCAGAGAGCATTACCCTTCACTCACAAGTCAATCCACCATACGAAGTTACGCTGCAAAATGAAGagctgATTGTGGACAATTACCAAACTGAAGAGATTGTAACCGACtggttatcaaaataa
Protein Sequence: MAAYKNIKMENGLHEDEYTDAMSANNLTDHVEYFEYEDNIGTGYEHESLIEYIEEDDVQNGNYVENETLEEQVKTHTLSIKHLQFDGQSQEIYRCLECAIDFVTLEDFTKVHQEMQKKLSNKASTNISTNDTLQNEQVKEDQVIENSNGGWLIIKEEHIIVDENETKELGDYLEMSEDMIEHTNFGKENNDIATDTLLHVKEEKQSITDEEDDGEKYFCCDCQLVFSDLEKAEQHVCSAINSSTVKQEDADNVVEQEEYGNDIRLYLEEQKQTLDTSKKSQSNEVQHHCAECDKTFNSLQGLQIHNRIHKTKDIKTQNDSFSVVELKKPTCPICNTNFSSYKNLKLHMKIHDAQQLRTIEQALPAGAKTQYKDMNKFFCEICNKSFEQNLLGIHKNMHQQSTEFNCGICNRHFENKTSYDMHMQMHADKPAKPRKQQIKQTDSSGRFACQYCGRTFQRPYEKVRHERVHTGEKPHACEVCGKTFRVSYSLILHLRTHTDIRPYVCATCNKRFKSQPVYAHHLRTHDAERAYKCEICSKSFRTSVQLSAHRNIHSKPYNCPVCNRPFASLYSVKIHMKTHNKLNRSGDTTKYSCYVCGAEYARVSALRIHMKDLHLIDFDTNRSLDLDDIISAEDQNSQSQHDTDCNEDEQEVDNEAAVLIAAAAEADCAAYIEAATAHTPDHTSTGPESITLHSQVNPPYEVTLQNEELIVDNYQTEEIVTDWLSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00192235;
90% Identity: iTF_00190121;
80% Identity: -